Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq7954 87.8 1e-12 seq3534 86.0 5e-12 seq43 84.2 2e-11 >seq7954 Length=38498 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| |||||| || ||||| ||||| ||||||||||| |||| ||| |||||| Sbjct 10148 ACCAAGTGCAATGTGGATTCCTTTTGGATATTGTAATCAGCCAGTGTTCGTCCATCTTCG 10207 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 | ||||| || ||| | || ||||| ||||||||| || | ||| || ||||| | Sbjct 10208 AGCTGTTTTCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATGCCCTCCTTGTCCTGA 10267 Query 101150 ATTTTTTGTTTCACAT 101165 || ||| |||||||| Sbjct 10268 ATCTTTGCTTTCACAT 10283 >seq3534 Length=113076 Score = 86.0 bits (94), Expect = 5e-12 Identities = 92/122 (75%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 101024 CTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAA 101083 || || || | ||| | |||||||| ||||| ||||||||||| |||| || | Sbjct 92767 CTCAAAACGAGGTGAAGTGTTGATTCCTTTTGGATATTGTAATCTGCCAAGGTCCGTCCA 92708 Query 101084 TCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTG 101143 |||||||||||||| || ||| |||||||||| || ||||| || | ||||||||| Sbjct 92707 TCTTCCAATTGTTTACCAGCAAATATAAGCCTCTGCTGGTCAGGAGGTATACCTTCTTTG 92648 Query 101144 TC 101145 || Sbjct 92647 TC 92646 >seq43 Length=356683 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| || || | ||| ||||||| ||| || ||||| || |||||||||||||| || | Sbjct 119849 TGCCACCACGAAGTCTCAACACCAAGTGAAAGGTTGACTCCTTTTGAATATTGTAGTCTG 119908 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| ||| || | ||||| || || | || ||||| || |||||| | Sbjct 119909 CCAAAGTACGACCATCCTCGAGCTGTTTACCAACAAAGATCAGCCTCTGCTGGTCTGGTG 119968 Query 101130 GCACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTG 101189 | | || ||||| || ||||||| || |||| | | | || |||| | | Sbjct 119969 GGATACCCTCTTTATCCTGAATTTTTGCCTTGACATTGTCAATGGTATCTGAGCTCTCAA 120028 Query 101190 TTTCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 |||| ||| || || || || || | || |||| |||||| ||||| Sbjct 120029 CCTCGAGGGTGATTGTCTTCCCTGTGAGGGTCTTAACAAAAATCTGCAT 120077 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409213874789385