Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq341 159 3e-34 seq3095 145 7e-30 >seq341 Length=228855 Score = 159 bits (176), Expect = 3e-34 Identities = 385/578 (67%), Gaps = 5/578 (1%) Strand=Plus/Plus Query 4545 AAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAATCAGTTCGTTAGAAAACGTT 4604 || |||||||||||||| || || || || |||| |||| ||||| || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 4605 AATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAG 4664 ||||| |||||||| |||| ||| || ||||||||||| ||| || || || ||| Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAG 2888 Query 4665 AATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCT 4724 || || ||||| ||| || || || | || || | || || || || | | Sbjct 2889 AAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGA-CT--CTGAGCCA 2945 Query 4725 TTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCG 4784 | ||||| | ||||| || || || |||| || || |||| || | || ||| Sbjct 2946 TCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCG 3005 Query 4785 TTAAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATAC 4844 | || | || | || || | || | ||||||| || | || || || ||| Sbjct 3006 TGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTAC 3065 Query 4845 ATTTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGTAAAA-GCATCTAGCTTCTGT 4903 || |||||||| ||||| || || || || || || || ||||| ||| | ||| || | Sbjct 3066 ATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCA-CGAGCCTCCGA 3124 Query 4904 TACTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGC 4963 | |||||| || || || ||| | | | ||| || || || ||||| ||| Sbjct 3125 GATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGC 3184 Query 4964 TGCAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCA 5023 || ||||| || | || || || || | || ||||| | ||||||| ||| Sbjct 3185 GGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCA 3244 Query 5024 GTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTT 5083 ||| | | ||| | | ||||| || ||||| | ||||||||||| || || ||||| Sbjct 3245 GTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTT 3304 Query 5084 TTTGTACATAGACCAAATATCAGGATACTGAATCGGAA 5121 |||||||| |||||| | ||||||||||| |||| Sbjct 3305 CTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAA 3342 >seq3095 Length=123113 Score = 145 bits (160), Expect = 7e-30 Identities = 380/574 (66%), Gaps = 7/574 (1%) Strand=Plus/Minus Query 4548 CACGCAAAATCACAATGCAAACCTTCGTCTCTGCTA-ATCAGTTCGTTAGAAAACGTTAA 4606 || ||||||||||| || ||||| || |||| || | || | ||||| ||||| ||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTC-GCGAGATTAACTCGTTTGAAAAAGTTAA 111527 Query 4607 TCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGCGGCAAATGACCCAGAAAAGAA 4666 ||| |||||||| || | |||||| ||||||||||| ||| || || || ||||| Sbjct 111526 TCCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAA 111467 Query 4667 TATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCCGAACGAGCTGGCTTTGTCTTT 4726 || ||||| ||| ||||| || | || || |||| || || | | | Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGGA---TTCTGAGCCGTC 111410 Query 4727 AATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACGCACGGAATTGTGTATATAGCGTT 4786 |||||| | ||||| || || || ||| ||| || |||| || | || |||| Sbjct 111409 AATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTG 111350 Query 4787 AAATAATTTACTTTTTTCAAATGGGTCTTGAATATAAGTGTCTATTAGTAGGCTATACAT 4846 || | | | || || | || | ||||| | || | || || || ||||| Sbjct 111349 GAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACAT 111290 Query 4847 TTCAGAATGTATATTTTCTATAGCAATCTGAAATCCGT-AAAAGCATCTAGCTTCTGTTA 4905 || ||||| ||||| || || || ||||| || || | ||||||| | || || | | Sbjct 111289 CTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCA-CGCGCCTCCGAGA 111231 Query 4906 CTTGAACTTCGTTACAAAATCTTTCTACTAAGTTTTCGTTTACTATACCGTCACTGGCTG 4965 |||||| || || || || | ||| || || || || ||||| ||| | Sbjct 111230 TTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGG 111171 Query 4966 CAAAAAACGCCAAAACATGAGATATAAAGTACTGTTCGTCAGGCTTAAGTTTTTTCCAGT 5025 ||||||| || | |||||| || || | || || || | | ||| | ||||| Sbjct 111170 CAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGT 111111 Query 5026 GGGGCAAATCTTTAGTTAAATCAACTTCTTCAACAGTCCAAAACGACGCTTCCGCTTTTT 5085 | | | ||| | | |||||||| ||||| | ||||||||||| || || || || | Sbjct 111110 GCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCT 111051 Query 5086 TGTACATAGACCAAATATCAGGATACTGAATCGG 5119 ||||||| |||||| | ||||| ||||| || Sbjct 111050 TGTACATTTCCCAAATTTGGGGATATTGAATTGG 111017 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426583704233495