Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq3095 197 2e-45 seq341 163 4e-35 seq6003 116 5e-21 seq1602 109 8e-19 seq1847 102 1e-16 >seq3095 Length=123113 Score = 197 bits (218), Expect = 2e-45 Identities = 415/615 (67%), Gaps = 8/615 (1%) Strand=Plus/Minus Query 48141 CATGCAAAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGA 48200 || ||||||||||| || | ||| ||||||| ||||| ||||| ||||| || | Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 48201 CCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAAT 48260 || ||||||| |||||| ||||| ||||||||||| || ||| ||| || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAA 111466 Query 48261 ATGCCTTCTACGGCCGCAAATGCG-GTAAGTCTCTCTCCGTAACTGGCTTC---GTTGTG 48316 || ||||| ||| ||||| ||| ||| | | ||| || | || ||| | || Sbjct 111465 ATCCCTTCGACGCAAGCAAAGGCGAGTATG-CGCTCAGCGAA---GGATTCTGAGCCGTC 111410 Query 48317 TATCCACCGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATT 48376 ||||| || | ||||| | ||||||||| |||||||| | || || || || | Sbjct 111409 AATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTG 111350 Query 48377 AAAGAGAAAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACAT 48436 || || || || || | ||| || | || | || | | |||||| ||||| Sbjct 111349 GAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACAT 111290 Query 48437 TTCGGAGTGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGAT 48496 ||||| || ||||| ||||| || ||||| || || |||||| | ||| || | ||| Sbjct 111289 CTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGAT 111230 Query 48497 CTGTACCTCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGC 48556 || ||||| | || | |||| | |||||| || || || || || || Sbjct 111229 TTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGC 111170 Query 48557 AAAAAATGCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTC 48616 |||||| || | ||||| ||||| |||| || || | |||| ||||| ||||| Sbjct 111169 AAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTG 111110 Query 48617 ATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTT 48676 | | ||| | || | ||| || ||||| || |||||||| || |||||||| || || Sbjct 111109 CTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTT 111050 Query 48677 ATACATATTCCATATATCACTGTATTGGATTGGGAAAATAACAAATCTATTTGGATTTTT 48736 ||||| | ||| || | ||||| |||||||| || || | || || |||| Sbjct 111049 GTACATTTCCCAAATTTGGGGATATTGAATTGGGAACATGCAGAACCGATCTGTATTTGG 110990 Query 48737 TGCAAGGATAGGTTC 48751 | ||||| ||||| Sbjct 110989 GGTGAGGATGGGTTC 110975 >seq341 Length=228855 Score = 163 bits (180), Expect = 4e-35 Identities = 548/848 (65%), Gaps = 10/848 (1%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATA 47906 ||| || |||||||| || | ||||| || ||||| ||||| || | ||| |||| | Sbjct 2480 TTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGCAAACTGATCAA 2539 Query 47907 TTTTCCATAAAATCAAATGGATTAACTGCATTATAAAtttttttAAATCCTAATTCTGAA 47966 || |||| |||||||||| || |||| || | ||| | | || | ||| Sbjct 2540 TT--CCATCCAATCAAATGGGTTTTGCACATTGTATAATTTGCTGTACCCAAGTTCATTC 2597 Query 47967 ATCAGTCTATCTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATA 48026 | ||||| ||| || |||||||| || || |||||| |||| ||||| || | Sbjct 2598 AACAGTCGATCAGCTACGAATTCAATGTACTGACTCATCAGATCACCGTTCATCCCAACC 2657 Query 48027 AGTTTAACTGGTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATT 48086 || | || || || || || ||| || || || || ||||| | || Sbjct 2658 AGGGCACAAGGAAGGGCTTCGCAAACAAATTCCCTCTCAATTTCTACGGCATCAGCAATA 2717 Query 48087 ATCGATGTTACCGTTTCCTCACTTGGTGGATACAACAAATGTTTAAACATTAAACATGCA 48146 ||| | || |||||||| || | || | | | | || || ||| Sbjct 2718 ATCCCCTTGACTCGATCCTCACTCAGTTTCATCCTCAGCAGGCTGTAGAGCAAGCACGCA 2777 Query 48147 AAATCACAATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGC 48206 |||||||| || | || ||||||| | || || ||||| || || || | || ||| Sbjct 2778 AAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCCAGGC 2837 Query 48207 ATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCT 48266 |||| ||| || || || |||||||||||||| ||| ||| || ||||| || ||| Sbjct 2838 ATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAGAAAATCCCT 2897 Query 48267 TCTACGGCCGCAAATGCGGTAAGTCT-CTCTCCGTAACTGGCTTCGTTGTGT--ATCCAC 48323 || ||| || || ||| ||| | | ||| | || | || | | ||||| Sbjct 2898 TCAACGCAAGCGAAGGCG---AGTATACGCTCAGCAAAGGACTCTGAGCCATCGATCCAG 2954 Query 48324 CGTTGTGCCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 48383 || | ||||| | |||||||||| |||||||| | || || || || | || || Sbjct 2955 CGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTGGAAAAGC 3014 Query 48384 AAGtttttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAG 48443 || || || | ||| || | |||| || | | |||||| ||||| || || Sbjct 3015 CTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACATCTCAGAA 3074 Query 48444 TGAATATTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACC 48503 || ||||| ||||| || || || || || ||||| | || || | ||| || ||| Sbjct 3075 TGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGAACC 3134 Query 48504 TCCGTACAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAAT 48563 ||| | || | | |||| | ||||| || || || || || || ||||| Sbjct 3135 TCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGCGAAAAAG 3194 Query 48564 GCTAATACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATA 48623 || | | || ||||| |||| || |||| ||||||||| | ||||| | ||| Sbjct 3195 GCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTGCTGTATA 3254 Query 48624 TCTTTTGATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATA 48683 || | || | ||| || ||||| || |||||||| || ||||||||||| || ||||| Sbjct 3255 TCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCTTGTACATT 3314 Query 48684 TTCCATAT 48691 | ||| || Sbjct 3315 TCCCAAAT 3322 >seq6003 Length=93342 Score = 116 bits (128), Expect = 5e-21 Identities = 164/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| | ||| | ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 78459 TATGTTTCAATAGCTGATTCTATGTC-CCATTGATGAATTCCTACCGCTACACGCATCAA 78517 ||||||| ||||||| ||||| || | ||| || || || || | || | |||||| Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 78518 CATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 78577 ||| || ||||| |||||||| ||| | || || || | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 78578 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 ||||||||||||||| | | || ||||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 Score = 102 bits (112), Expect = 1e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | ||||| || |||| ||| | |||| || |||||||| ||| || Sbjct 80734 ACCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCC 80793 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||| |||||||||||| ||| ||||||||| | || || || ||| || || Sbjct 80794 ATTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGA 80853 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||| || || || || | ||| || ||||| ||||| || || Sbjct 80854 GACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAAT 80913 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| || || || || ||||| || ||| |||||||| Sbjct 80914 GCCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCT 80955 >seq1602 Length=196056 Score = 109 bits (120), Expect = 8e-19 Identities = 147/205 (72%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 ||| |||||||| | ||||| || || | ||| | ||||||| |||||||| |||||| Sbjct 115644 ACCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACC 115703 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || || || |||||||||||| ||||||||||||| |||| || || ||| | || Sbjct 115704 ATTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGA 115763 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || |||||||| || || || | ||| || |||| |||||| || || Sbjct 115764 GACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATAT 115823 Query 78338 ACCCTCTATACTGTCATCCATCATG 78362 ||||| || || || || ||||| Sbjct 115824 GCCCTCAATGCTATCCTCTTTCATG 115848 Score = 104 bits (114), Expect = 3e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 78399 GTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAGATTG 78458 ||||| |||||||| | ||| ||||||||||| ||||||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 78459 TATGTTTCAATAGCTGATTCTATGTCCCATTGATGAATTCCTACCGCTACACGCATCAAC 78518 ||||||| |||| | || || || || | ||| || || || | || | ||||||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 78519 ATATGCTGAGGTCTTTCAACCGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 78578 || || ||||| || || || ||| | || || || || || || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 78579 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTCTCGTAAATAAT 78625 |||||||||||||| || | || ||||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 >seq1847 Length=115635 Score = 102 bits (112), Expect = 1e-16 Identities = 158/223 (71%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 78158 ACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 78217 |||||||||||| | ||||| || |||| ||| | |||| || |||||||| ||| || Sbjct 24546 ACCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCC 24605 Query 78218 GTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAATGGA 78277 || |||| |||||||||||| ||| ||||||||| | || || || ||| || || Sbjct 24606 ATTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGA 24665 Query 78278 TATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTAGAT 78337 | || ||||| || || || || | ||| || ||||| ||||| || || Sbjct 24666 GACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAAT 24725 Query 78338 ACCCTCTATACTGTCATCCATCATG-TTAAGAAGAAAACAGCT 78379 ||||| || || || || ||||| || ||| |||||||| Sbjct 24726 GCCCTCGATGCTATCTTCTTTCATGCATATCAAG-AAACAGCT 24767 Score = 84.2 bits (92), Expect = 3e-11 Identities = 117/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 77904 TCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCAT 77963 |||||||| || || | ||||| || || |||||| |||| |||||||||| Sbjct 24081 TCATATTGTGTGTACAAAGTCTCAAACTCTTCACCCCAACAATCAGCCAATCCAGGAGCC 24140 Query 77964 TCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCA 78023 |||||||| || | ||||||||| | |||| | |||| | |||||| | |||| Sbjct 24141 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGGACTCTCTGCATAAATAAATCA 24200 Query 78024 GGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTC 78067 || | ||| |||||| ||||||||||| || | || ||||| Sbjct 24201 GGCACCCAAAGAGCATAAAATAGATCTCTGGCACGGTGCTCTTC 24244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693891509029600