Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3095 181 2e-40 seq341 176 6e-39 seq6003 134 2e-26 seq1847 134 2e-26 seq1602 131 2e-25 >seq3095 Length=123113 Score = 181 bits (200), Expect = 2e-40 Identities = 567/873 (65%), Gaps = 14/873 (2%) Strand=Plus/Minus Query 46339 TTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATAT 46396 || ||||||||||| || | ||||| || ||||| ||||| || | || |||| || Sbjct 111876 TTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTTGTTTTCCCCTGTAAACTGATCAAT 111817 Query 46397 TTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAAA 46456 | |||| ||||||| || || |||||| || | ||| | |||| | | | | Sbjct 111816 T--CCATCCAATCAAATGGGTTTTGAACATTGTATAATTTGCTGTATCCAAGTGCATTCA 111759 Query 46457 TCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATGA 46516 ||||||||| || || ||||| || || |||||| |||| ||||||||| | | Sbjct 111758 GCAGTCTATCGGCTACAAATTCAATGTATTGACTCATCAGATCACCATTCATTCCGACCA 111699 Query 46517 GTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATTA 46576 | || ||||| || | ||| || || ||| || || || | | | Sbjct 111698 GGGCACAAGGAAGAGCATCGCAGACAAATTCCCTCTCGATATCCACCGCGTCAGCAACAA 111639 Query 46577 -TCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 || | | ||| ||||| || || | ||| | | | | | | || ||| Sbjct 111638 GTCCCT-TGACTCGATCCTCGCTGAGTTTCATCCTCAGAAGGCTGTAGAGCAGGCAAGCA 111580 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | || ||||||| ||||| ||||| ||||| || | |||||| Sbjct 111579 AAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAATCCAGGC 111520 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 |||| |||||||||||| ||||||||||| || ||| ||| || ||||| || ||| Sbjct 111519 ATTAATCCACGCTTTTTTAGCCAAAATATCGCGCAGAAGCTTCCCGAGAAGAAAATCCCT 111460 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAACTGGCATCATTA----TGAATCCA 46811 || || || || |||| | | ||| || | | || | | | |||||| Sbjct 111459 TCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAA----GGATTCTGAGCCGTCAATCCA 111404 Query 46812 CCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAG 46871 | | ||||| | ||||| ||| |||||||| | || || || || | || || Sbjct 111403 GCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGTGGAAAAG 111344 Query 46872 AAAGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGA 46931 || || || || ||| || | ||| | || | | |||||| ||||| || || Sbjct 111343 CCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACATCTCGGA 111284 Query 46932 ATGAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTAC 46991 ||| || || ||||| || ||||| || || |||||| | || || | || || || Sbjct 111283 ATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGATTTGAAC 111224 Query 46992 CTCTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAA 47051 |||| | || | ||| | |||||| || || || || || |||||||| Sbjct 111223 CTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGGCAAAAAA 111164 Query 47052 TGCCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGAT 47111 || | ||||| ||||| |||| || ||||| |||| ||||| ||||| | | Sbjct 111163 GGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGTGCTGTAC 111104 Query 47112 ATCTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACAT 47171 ||| | || | ||| || ||||| || ||||| || || |||||||| || || ||||| Sbjct 111103 ATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCTTGTACAT 111044 Query 47172 ATTCCATATATCACGATATTGGATCGGAAAAAT 47204 | ||| || | ||||||| || || || || Sbjct 111043 TTCCCAAATTTGGGGATATTGAATTGGGAACAT 111011 >seq341 Length=228855 Score = 176 bits (194), Expect = 6e-39 Identities = 564/871 (65%), Gaps = 8/871 (1%) Strand=Plus/Plus Query 46338 TTTTTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAA--TGATATA 46395 ||| ||||||||||| || | ||||| || ||||| ||||| || | ||| |||| | Sbjct 2480 TTTCTGGTATTCACCAACCCTCTTCTCAAAGAAATTCGTTTTCCCCTGCAAACTGATCAA 2539 Query 46396 TTTTCCATAAAATCAAACGGATTAGTAACATTATAAAtttttttAAATCCTAATTCTGAA 46455 || |||| ||||||| || || ||||| || | ||| | | || | ||| Sbjct 2540 TT--CCATCCAATCAAATGGGTTTTGCACATTGTATAATTTGCTGTACCCAAGTTCATTC 2597 Query 46456 ATCAGTCTATCTGCAACGAATTCTATATACGTTTTCATCATTTCACAATTCATTCCTATG 46515 | ||||| ||| || |||||||| || ||| |||||| |||| ||||| || | Sbjct 2598 AACAGTCGATCAGCTACGAATTCAATGTACTGACTCATCAGATCACCGTTCATCCCAACC 2657 Query 46516 AGTTTGACCGGTAGAGCCTCCGTAAGAAACTCTTGTTCAATAGTGACAGCATCCGATATT 46575 || || || || || || ||| || ||||| || ||||| | || Sbjct 2658 AGGGCACAAGGAAGGGCTTCGCAAACAAATTCCCTCTCAATTTCTACGGCATCAGCAATA 2717 Query 46576 ATCGATGTTACTGTTTCCTCACTTGGTGGATGCATCAAATGTTTAAACATTAAACATGCA 46635 ||| | ||| |||||||| || | ||| | | | | || || ||| Sbjct 2718 ATCCCCTTGACTCGATCCTCACTCAGTTTCATCCTCAGCAGGCTGTAGAGCAAGCACGCA 2777 Query 46636 AAATCACAATGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGC 46695 |||||||| || | ||| ||||||| | || || ||||| || || || | |||||| Sbjct 2778 AAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTTAATCCAGGC 2837 Query 46696 ATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCT 46755 |||| ||| ||||| || ||||||||||| || ||| ||| || ||||| || ||| Sbjct 2838 ATTAATCCTCGCTTCTTTAGCCAAAATATTGCGCAGAAGCTTCCCGAGAAGAAAATCCCT 2897 Query 46756 TCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTA--ACTGGCATCATTATGAATCCACC 46813 || || ||||| |||| | | ||| | | ||| | | || ||||| | Sbjct 2898 TCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAAGGACTCTGAGCC--ATCGATCCAGC 2955 Query 46814 TTTGAGCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAA 46873 | ||||| | ||||| |||| |||||||| | || || || || | || || Sbjct 2956 GGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTGCGTGGAAAAGCC 3015 Query 46874 AGtttttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAAT 46933 || || || || ||| || | ||| | || | | |||||| ||||| || |||| Sbjct 3016 TATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGTACATCTCAGAAT 3075 Query 46934 GAATGTTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCT 46993 | || || ||||| || || || || || ||||| | || || | || || |||| Sbjct 3076 GGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCGAGATTTGAACCT 3135 Query 46994 CTGTACAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATG 47053 | | || | | ||| | ||||| || || || || || || ||||| | Sbjct 3136 CCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGGCGGCGAAAAAGG 3195 Query 47054 CCAATACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATAT 47113 | | | || ||||| |||| || || || ||||||||| | ||||| | |||| Sbjct 3196 CAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGTCAGTTTTTCCCAGTGCTGTATAT 3255 Query 47114 CTTTTGATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATAT 47173 | | || | ||| || ||||| || ||||| || || ||||||||||| || ||||| | Sbjct 3256 CCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCTTTCTTGTACATTT 3315 Query 47174 TCCATATATCACGATATTGGATCGGAAAAAT 47204 ||| || | |||| || || ||||| || Sbjct 3316 CCCAAATTTTGGGATACTGAATTGGAAACAT 3346 >seq6003 Length=93342 Score = 134 bits (148), Expect = 2e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||||| || |||| ||| | |||| || |||||||| |||||| Sbjct 80734 ACCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCC 80793 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||| |||||||||||| ||| ||||||||| ||||| || ||| || ||| Sbjct 80794 ATTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGA 80853 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||| || || ||| ||| | |||||| ||||| || ||||| || Sbjct 80854 GACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAAT 80913 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| || ||||| || ||||| || ||| |||||||| Sbjct 80914 GCCCTCAATGCTATCTTCTTTCATGCATATCAAG-AAACAGCT 80955 Score = 120 bits (132), Expect = 4e-22 Identities = 165/228 (72%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | ||||||||||||||| || |||||| | ||| | ||||| Sbjct 81095 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGTGTAAACCATCGCTGAGACAATAGATGA 81154 Query 77054 TATGTTTCAATAACTGCTTCTATATC-CCATTGATGAATTCCTACAGCGACACGCATCAA 77112 ||||||| ||| |||| |||||||| | ||| || || || |||| || | |||||| Sbjct 81155 TATGTTTTGATAGCTGCATCTATATCATCCTTG-TGGATCCCAACAGAAACCCTCATCAA 81213 Query 77113 CATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAA 77172 ||| || ||||| | ||| ||| ||| | || || || | || ||| | || | Sbjct 81214 CATGTGTTGAGGCCTTTCAACAACCTTCCCTCTGATCTTTAAGAGATACGATCTCTCAAG 81273 Query 77173 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 ||||||||||||||| | | || ||||||||| || || || || Sbjct 81274 AGTTTTAAAACCAAAGAAATCATAATCAAAGTCTCTGTCATATATGAT 81321 >seq1847 Length=115635 Score = 134 bits (148), Expect = 2e-26 Identities = 165/223 (74%), Gaps = 2/223 (1%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 |||||||||||| | ||||| || |||| ||| | |||| || |||||||| |||||| Sbjct 24546 ACCTCCCTGATCAACATATCGAGCTGTGTCATTGAACACTCGCAGCATTGGAACAATGCC 24605 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || |||| |||||||||||| ||| ||||||||| ||||| || ||| || ||| Sbjct 24606 ATTGGATGCCCCATTTGTTCCACGAATGTAACTTCCAGTAGCACGGATGTTATGAACAGA 24665 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || ||||| || || ||| ||| | |||||| ||||| || ||||| || Sbjct 24666 GACACCAATTCCCCCAGCTGATTTGCTGATAACAGCACACTCTTTCAGAGTATCATAAAT 24725 Query 76933 GCCCTCTATACTATCATCCATCATG-TTAAGAAGAAAACAGCT 76974 |||||| || ||||| || ||||| || ||| |||||||| Sbjct 24726 GCCCTCGATGCTATCTTCTTTCATGCATATCAAG-AAACAGCT 24767 Score = 87.8 bits (96), Expect = 3e-12 Identities = 110/151 (73%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 76499 TCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCAGGACAT 76558 ||||||||||| || || ||||| || || |||||| |||| |||| |||||| Sbjct 24081 TCATATTGTGTGTACAAAGTCTCAAACTCTTCACCCCAACAATCAGCCAATCCAGGAGCC 24140 Query 76559 TCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAGAGATCA 76618 ||||| ||||| | ||||||||| | |||| | || | | |||||| | |||| Sbjct 24141 TCATTTGGACAAAACAATGACCATTGCCCATTAGATTGGACTCTCTGCATAAATAAATCA 24200 Query 76619 GGTATCCATAGAGCAATAAATAGATCTCGGG 76649 || | ||| |||||| ||||||||||| || Sbjct 24201 GGCACCCAAAGAGCATAAAATAGATCTCTGG 24231 >seq1602 Length=196056 Score = 131 bits (144), Expect = 2e-25 Identities = 152/205 (74%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 76753 ACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACTCTCAACATTGGAATAATGCC 76812 ||| |||||||| | ||||| || || | ||| | ||||||| |||||||| ||| || Sbjct 115644 ACCCCCCTGATCCACATATCGAGCTGTATCATTGAACACTCTCAGCATTGGAACAATACC 115703 Query 76813 GTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATAGA 76872 || || || |||||||||||| ||||||||||||| |||||| || ||| | ||| Sbjct 115704 ATTGGAGGTCCCATTTGTTCCACGAATATAACTTCCAGTTGCACGGATGTTATGCACAGA 115763 Query 76873 TAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAGAT 76932 | || |||||||| || ||| ||| | |||||| |||| ||| ||||| || Sbjct 115764 GACACCAATTCCTCCGGCTGATTTGCTGATGACAGCACACTCCTTCAGTGTATCATATAT 115823 Query 76933 GCCCTCTATACTATCATCCATCATG 76957 |||||| || ||||| || ||||| Sbjct 115824 GCCCTCAATGCTATCCTCTTTCATG 115848 Score = 116 bits (128), Expect = 5e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 76994 GTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGATTG 77053 ||||| |||||||| | |||||||||||||||||| |||||| | ||| | |||| | Sbjct 116011 GTTCCAGCATTAAAAAGTGTAGGAGATGCATGAGTAAACCATCGCTGAGATAAGAGATGG 116070 Query 77054 TATGTTTCAATAACTGCTTCTATATCCCATTGATGAATTCCTACAGCGACACGCATCAAC 77113 ||||||| |||||| | || ||||| | ||| || || |||| || | ||||||| Sbjct 116071 TATGTTTTAATAACAGAATCGATATCATCCTTATGGATCCCAACAGAAACCCTCATCAAC 116130 Query 77114 ATATGCTGAGGTCGTTCTACAGTCTTATTATTTATTTTCAACAAGTATGATTTTTCCAAA 77173 || || ||||| | || ||| ||| | || || || || || || | || | Sbjct 116131 ATGTGTTGAGGCCTCTCCACAACCTTCCCTTGGATCTTTAAGAAATAAGACCTCTCAAGG 116190 Query 77174 GTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCTTTCGTAAATAAT 77220 |||||||||||||| || | || ||||||||| || || || || Sbjct 116191 GTTTTAAAACCAAAGTAATCATACTCAAAGTCTCTGTCATATATGAT 116237 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712136670964800