Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031078.1 Length=50082 Score E Sequences producing significant alignments: (Bits) Value seq62581 251 2e-62 seq84895 212 2e-50 >seq62581 Length=657 Score = 251 bits (278), Expect = 2e-62 Identities = 456/661 (69%), Gaps = 12/661 (2%) Strand=Plus/Plus Query 39548 GAGCGTGTCGCCCCTGGCCAGCAGCTCGTAGGTAGCAACGTCGTCCAGCGGGATGTTCTC 39607 ||| |||||||||| ||||||||| ||||| || || ||| || | || || ||| Sbjct 3 GAGGGTGTCGCCCCGGGCCAGCAGGTCGTACGTCGCCTGGTCCTCGAAGTCGAGGTCCTC 62 Query 39608 CAGGTCGACGTGCTCCCCACGGTTGGCGCG-GATGTTCTCGACCGCGTCGCCCATGATCG 39666 ||| ||| || | |||||| ||| |||||| | ||||||| | | || || Sbjct 63 CAGCACGAGGTCGATGTCGCGGTTG-CGCTTGATGTTGATCAGCGCGTCGTCGAGGACCG 121 Query 39667 TGAGGTTCCGGAGCCCGAGGAAGTCCATCTTCACCGCGCCCAGGCTCTCGCACTGGGGGT 39726 | ||||| || || || |||||||||||||| ||| || || ||||||| |||| Sbjct 122 TCAGGTTGCGCAGGCCCAGGAAGTCCATCTTGACCAGCCCGAGCGCCTCGCACATCGGGT 181 Query 39727 AGTCCCACTGCGTCACGGTCACGCCGTCCGCAGGGCGGACCCACACCGGGAGGTGATCGA 39786 |||| ||||||| | | || |||||||| ||| | | || | | |||| Sbjct 182 AGTCGAACTGCGTGATGATCGCGCCGTCCTGCTCGCGCTTCATGATGGGCACGATGTCGA 241 Query 39787 CCAACGGCTCGTTGGACATGATCACACCGGCCGCGTGAACGCCCATCTGCCGGACGAGAC 39846 || ||| ||| | |||||||| || ||||||||||| |||||| ||| |||| | | Sbjct 242 TCAGCGGATCGCTCGACATGATGACGCCGGCCGCGTGGACGCCCCACTGACGGATCTGGC 301 Query 39847 CTTCGAGCCCGAGCGCAGTGTCGATGACCTGCTTCGA--GTCCGGGTCGTTCTCGTACAG 39904 | || || || || || || | | || ||| || ||| | ||| | |||| ||| Sbjct 302 CCTCCAGGCCCAGGGCGGTCTGGTAGA--TGCGCCGGACGTCGGCGTCCTCGTCGTGCAG 359 Query 39905 CCCACGGATCTCGCCCGCCTCGTCGTAGCGCGGGTGCTCCGGGTTGAAGATGCCCTCCAG 39964 | |||| ||||| | ||| |||| ||| || ||| || ||| | ||||| || Sbjct 360 CTTGCGGAAGTCGCCGCCGTCGCCGTACCGCTTGTCGTCCTTGTCGAACAGGCCCTTGAG 419 Query 39965 GGGCATCGAGTTGCCCATCACGTCGGCCGGGTACGCCTTGGTCAGCTTCTCGCCGACCTG 40024 | | |||||||| | |||||||||| ||||||||| | ||||||| | Sbjct 420 CGTGACGCCCTTGCCCATGATGTCGGCCGGGAGCGCCTTGGTGATGCGCTCGCCGTGCGA 479 Query 40025 GAAGGGCTTGTCCAGCACGCGCGCCGCGTCCTTCATCGCG---TTGCGCGCCTTGATCCG 40081 ||| || | ||||| |||||||| |||||||| |||||| ||| | ||||| || Sbjct 480 GAACGGGTAGTCCATGACGCGCGCGGCGTCCTTGATCGCGGCCTTG---GACTTGAGGCG 536 Query 40082 ACCGAAGGTCCCGATCTGTGCGACCTTGTCCGCCCCGTACTTCTCGGTGACGTACCTGAT 40141 ||||| ||| ||||| ||||| ||| | |||||||| | | ||||||| | ||| Sbjct 537 GCCGAACGTCGCGATCATCGCGACGCGCTCCTCGCCGTACTTGTTGCTGACGTAGCGGAT 596 Query 40142 CACGTCGCCCCGTCGCCGGTCATCGAAGTCGATGTCAACGTCGGGCATGGACACGCGCTC 40201 || |||| || || || || |||||||||||||| | ||||||||| ||| ||||| Sbjct 597 GACCTCGCTGCGACGACGCTCGTCGAAGTCGATGTCGAAGTCGGGCATCGACGGACGCTC 656 Query 40202 G 40202 | Sbjct 657 G 657 >seq84895 Length=1121 Score = 212 bits (234), Expect = 2e-50 Identities = 470/700 (67%), Gaps = 14/700 (2%) Strand=Plus/Plus Query 40631 CATCTCGGCGGCCGACTTGATGTAGTACCCGGAGCCCTCGAACCGGAAGCGGTTCGGGTT 40690 |||||||||||| |||||||||||| | || | |||||| ||||||||| |||| Sbjct 58 CATCTCGGCGGCGGACTTGATGTAGAAGTCGTTGGAGTCGAACTTGAAGCGGTTGGGGTC 117 Query 40691 GTCGATCGTCGTGCCGGTCTGGACGCAGAGCAGAGCGTCGTGCGCGGTGCTCTCCTCGGC 40750 | || || |||||| ||||||||| ||||| || ||| || | ||||||| Sbjct 118 GGTGAGGGTGCTGCCGGACTGGACGCACAGCAGCGCCGAGTGGGCCTCGGCGTCCTCGGG 177 Query 40751 CGTGACGTAGTGCGAGTCGTTCGTGACCACGGGGGTGAGCGCGAG---GTGCTTGCCCAG 40807 | ||||||||||||||| || | | || | || |||| | |||| || Sbjct 178 ACTCGTGTAGTGCGAGTCGTTGGTCGCGATGGCCGGCAGGCCGAGATCGGCCTTG---AG 234 Query 40808 CCGGTAGAGGTCGTCGCGGACACGCCGCTCGATCTCCAGGCCGTGGTCCATGATCTCCAG 40867 ||| || ||||||| || |||||||||||| || ||||||||||| | ||| || Sbjct 235 CCGCAGCAGCCCGTCGCGCACGACCCGCTCGATCTCGAGACCGTGGTCCATCAGCTCGAG 294 Query 40868 GAAGTACCGGTCCCGACCGAAGACCTCCAGGTACCGGCCAGCCTCGGCAACGGCCTCGTC 40927 |||| | ||| ||||||| ||| || || | | ||| ||| |||| || Sbjct 295 GAAGAAGTTCTCCTTGCCGAAGATGTCCTGGAACTCGGCGGCCGAGGCGCGCGCCTTCTC 354 Query 40928 GTACTGCCCGAGGTTGAGCCGGGTCATGATCGCACCGCCAGGGCATCCCGTGGTGACGAT 40987 ||| | |||| | |||| ||| |||| | || ||||| || || ||| |||| Sbjct 355 GTAGTTGCCGATGCGCAGCCACGTCTGGATCTCGCCCGAGGGGCACCCGGTCGTGGCGAT 414 Query 40988 CAGGCCCTCGTTGT-GCTCGGCGACCAGGTCGAAGTCCATGCGCGGGTACTTCCCGAGCA 41046 |||||||| | || || | || | ||||||| ||| |||||| ||| | | | Sbjct 415 CAGGCCCTTGCCGTAGCGCTGC-AGCAGGTCGCGGTCGGCGCGCGG---CTTGCGGTACT 470 Query 41047 GGCCCTCCTGGTACGAGCGGGAGCTGAGCTTCATGAGGTTGTGCAGGCCGGTCTTGTTCT 41106 ||||||| || || | |||| || | |||||||||| ||| || ||| Sbjct 471 GGCCCTCGAGGCTCGCGTACGAGCCGATGCGGAACAGGTTGTGCATGCCCTCGGTGGTCT 530 Query 41107 CCGCGAGGATCGTGAGGTGCGTGTACGCACCGCGACCGCTCACGTCGTAACGCTTCTGGT 41166 | | || | ||| | ||| ||||| || || || ||| ||||||| ||| | Sbjct 531 CGGACAGCAGCGTCATGTGGGTGTAGGCGCCACGTCCGGCCACGTCGGCGTCGATCTTGG 590 Query 41167 CCTCGGTGCCCCACTTGACGCGCTCCTGGTCGAAGCGCG---AGCCCGGAGCCATGTACG 41223 | | || ||||| ||| || || || ||| | | || | || ||||| Sbjct 591 CGCCCTTGTTCCACTGCACGGCCTTCTTCTCCGTGCGGGGGATGTTGGGCGTCAGGTACG 650 Query 41224 CCTCGATGCCGATGATCGGCTTGACCCCAGCGGCCTGAGCCGTGGTGAAGAAGTCGTGGG 41283 |||| |||||||||||||||||||| || |||| ||| || || ||||||||| || Sbjct 651 CCTCCATGCCGATGATCGGCTTGACGCCGTGCGCCTTGGCCTTGCTGTAGAAGTCGTAGG 710 Query 41284 CACCGTGCAGGTTGCCGTGGTCAGTGACTGCGACTGCCGG 41323 | |||||||||||||||||||| || | |||| ||||| Sbjct 711 CGCCGTGCAGGTTGCCGTGGTCGGTCATCGCGATGGCCGG 750 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 159970571830920