Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_031129.1 Length=103445 Score E Sequences producing significant alignments: (Bits) Value seq40230 122 6e-23 >seq40230 Length=632 Score = 122 bits (134), Expect = 6e-23 Identities = 343/516 (66%), Gaps = 22/516 (4%) Strand=Plus/Minus Query 59147 TCGCGGATGCGCGGCGCGAAGCGGAAGCCTAGCAGGTGCATCAGGGCAAAGACGTGATCG 59206 || || | ||| |||||||||||| |||| | | ||||||| | || || || ||| Sbjct 508 TCACGCAAGCGTGGCGCGAAGCGGTAGCCGAAGAACGGCATCAGCCCGAACACATGGTCG 449 Query 59207 GTGAAGCCGGCCGTGTCGGTGTAGTGCTCCTCGATCCGCAGGTCGGACTCGTGGTACAGC 59266 | |||| |||| ||||| || ||||| |||||| || ||| || ||| |||||| Sbjct 448 GACGCGCCGCCCGTATCGGTATAATGCTCTTCGATCGACAACCCGGTCTGGTGATACAGC 389 Query 59267 AGGCCGTCGAGCACATAGGTGGAAT----CGCGGACGCCGACATTCACCACGCGGGTGCT 59322 | |||||||| ||||||| | | ||||| ||| | || |||||| | || Sbjct 388 AAACCGTCGAGGACATAGGGAGCCTCGCCCGCGGTCGCGGCGAT----CACGCGCGAGCC 333 Query 59323 GAACGGCGCGTACTGGTCGGAGATATGGGTATAGAACAGCCGTCCCGGCTCGCTACCGTA 59382 |||||| | |||||||| |||||||| || |||||| | || || ||| | |||| Sbjct 332 GAACGGGTCATACTGGTCCGAGATATGAGTGTAGAACGACACACCGGGTTCGTTGCCGTT 273 Query 59383 CTTCGGGTTGACGTGCCCGGTGCTC---TCGCCCCGGCCACCCGCGCGGAAGCGCTGGCC 59439 || ||||| | || || || ||||||| || || || |||| |||| || Sbjct 272 GCGCGCGTTGATAT---CGCTGATCGCAGCGCCCCGCCCGCCGGCATGGAATTGCTGTCC 216 Query 59440 ATCGGAGGATGAGGTCGTGCCGTCGCCCCAGTGGGCGGCAA-AGGCGTGGCGATACTGGT 59498 ||| || ||| | ||||| |||||| |||||| ||| | ||| | || Sbjct 215 GTCGCTCGACGAGCTGATGCCGCTGCCCCATAATCCGGCAAGCGGCATCGCGCGA-TGCG 157 Query 59499 GGTTGACCAGCTCGGCCAAG-GCCGCCGAATAGGTTTCGTCGCGGATGTGCCAGGCTTGC 59557 | || ||| ||| || || ||| | ||||| | |||| |||||||||| | ||| Sbjct 156 CCTCGATCAG-TCGTCCGAGCGCCTCGCCATAGGCGGCTTCGCTGATGTGCCAGTCATGC 98 Query 59558 AGCCAGGACAGCTTGGCGTAGGTCAGG--CCGGGGCTCGACTCGGCCATCTTGGTCAGCC 59615 || | || || ||| | | | || || ||| || ||||| |||||| | Sbjct 97 AGATGCGCGAG-TTAGCGCA-GACTGGCACCACGGCAACTGTCCGCCATGCGGGTCAGGC 40 Query 59616 CGAGGTTGATCGCATCACCGAGGATTGCGGACAGCA 59651 |||| ||||| |||| | ||||| ||| ||||| Sbjct 39 CGAGATTGATGCCATCGGCAAGGATCACGGTCAGCA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 330538200864490