Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Fraxinus_20excelsior_20[genbank_20GCA_5F900149125.1_202017-01-20] 89,515 sequences; 867,455,155 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq3095 156 4e-33 seq341 145 8e-30 seq368 87.8 2e-12 >seq3095 Length=123113 Score = 156 bits (172), Expect = 4e-33 Identities = 385/580 (66%), Gaps = 7/580 (1%) Strand=Plus/Minus Query 23509 CATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTTAAT 23568 || ||||||||||| |||| || ||||| | || || || || ||||| |||||| Sbjct 111585 CAAGCAAAATCACAGTGTAAACCCTCATCTCGCGAGATTAACTCGTTTGAAAAAGTTAAT 111526 Query 23569 CCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGAT-CCGGAAAAGAA 23627 || ||||||||||| || ||||| | ||||||||| || ||| | | | || || ||||| Sbjct 111525 CCAGGCATTAATCCACGCTTTTTTAGCCAAAATATCGC-GCAGAAGCTTCCCGAGAAGAA 111467 Query 23628 AATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTATAATCAGA 23687 ||| || || || |||||||| | | || | | || | ||| | | | | Sbjct 111466 AATCCCTTCGACGCAAGCAAAGGCGAGTATGCGCTCAGCGAAGG----ATTCTGAGCCGT 111411 Query 23688 -AATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTGCTT 23746 |||||| | ||| || |||||| ||||| || || || ||||| | Sbjct 111410 CAATCCAGCGGAGGGCCCACTTGGCCTTCTTCCCAACACAAGGAACGGTCTCGATTGCGT 111351 Query 23747 TTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTATACA 23806 || || | | || || || ||| ||||||| | |||| || | ||| |||| Sbjct 111350 GGAAAAGCCGATTCTTCTCCTCCGAATCCTTTATATAGGACTCAAGAAGAAGACTGTACA 111291 Query 23807 TTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAGACA 23866 | || ||||| ||||| ||||| || ||||| |||||||||||| | || || || | Sbjct 111290 TCTCGGAATGGATATTCTCAATCGCGATCTGGAACCCATAAAAAGCACGCGCCTCCGAGA 111231 Query 23867 ATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAGCAG 23926 |||||| || || | || || ||||| ||| || |||||| || || || | Sbjct 111230 TTTGAACCTCTTTCATGAACCTCCCAGCTAGATTCTCCAAAACAATGCCGTCGGAGGCGG 111171 Query 23927 CAAAGAAAGCAAGAACATATTTTATAAAATGTCTTTCATCAGTTGATAATTTTTTCCAAT 23986 |||| || |||||||||| || || ||||| | ||||| | ||||| | ||| | Sbjct 111170 CAAAAAAGGCAAGAACATGCTTAATGAAATGCTTCTCATCCTCGGTCAATTTATCCCAGT 111111 Query 23987 CATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGGCACGCT 24046 | | ||| | || |||||||| || || | |||||||| ||| || || Sbjct 111110 GCTGTACATCCTGGGACAAATCAACCTCTTCCGCCGTCCAAAACGAGGCCTCTGCCTTCT 111051 Query 24047 TATACATTAGCCAAATATCATTATGTTGTATTGGAAATAT 24086 | |||||| |||||| | || ||| ||||| || || Sbjct 111050 TGTACATTTCCCAAATTTGGGGATATTGAATTGGGAACAT 111011 >seq341 Length=228855 Score = 145 bits (160), Expect = 8e-30 Identities = 388/586 (66%), Gaps = 13/586 (2%) Strand=Plus/Plus Query 23506 AAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAAATGTT 23565 || || ||||||||||| |||| ||| ||||| | | ||||| || || || || ||| Sbjct 2769 AAGCACGCAAAATCACAGTGTAAGCCCTCATCTCGAGAGATCAACTCGTTCGAGAAAGTT 2828 Query 23566 AATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCA-AATGATCCGGAAAA 23624 ||||| |||||||||||||| || || | |||||||||||| ||| || ||| || || Sbjct 2829 AATCCAGGCATTAATCCTCGCTTCTTTAGCCAAAATATTGC-GCAGAAGCTTCCCGAGAA 2887 Query 23625 GAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGTACCAAATGTTGCATTAT-AAT 23683 |||||| || ||||| || ||||| | | ||| | |||| | | | | | Sbjct 2888 GAAAATCCCTTCAACGCAAGCGAAGGCGAGTATACGCTCAGCAAA----GGACTCTGAGC 2943 Query 23684 CAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTACACACTCAATTGTTTCAATTG 23743 || ||||| | ||| || |||||| | ||||| || || || |||| Sbjct 2944 CATCGATCCAGCGGAGGGCCCACTTGGCCTTCTTCTCCACACAAGGAACGGTCTCGATTG 3003 Query 23744 CTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATATATGTATCAATTAGTAAACTAT 23803 | | || || | | || || || ||| | ||||| | |||| || | ||| | Sbjct 3004 CGTGGAAAAGCCTATTCTTCTCCTCCGAATCCTTGATATAAGATTCAAGAAGAAGACTGT 3063 Query 23804 ACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACCCATAAAAACATCTAGCTTCAG 23863 |||| |||||||| ||||| ||||| || || || ||||||||||| | ||| || | Sbjct 3064 ACATCTCAGAATGGATATTCTCAATCGCGATTTGGAACCCATAAAACGCACGAGCCTCCG 3123 Query 23864 ACAATTGAACATCATTAAAAAATCTTTTAGCTAAATTTTCGTTAACAATACCATCACTAG 23923 | | |||||| || || | || ||| ||| | || || ||| || || || | Sbjct 3124 AGATTTGAACCTCCTTCATGAACCTTCCAGCGAGGTTCTCCAAAACGATGCCGTCTGAGG 3183 Query 23924 CAGCAAAGAAAGCAAGAACATATTTTATAAAATG--TCT-TTCATCAGTTGATAATTTTT 23980 | || || || ||||||| | || || ||||| ||| || ||||| | ||||| Sbjct 3184 CGGCGAAAAAGGCAAGAATGTGCTTAATGAAATGCTTCTCGTCCTCAGT---CAGTTTTT 3240 Query 23981 TCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACTGTCCAAAAACTTGCCAAGG 24040 ||| | | ||||| | || ||||| || || || | |||||||| ||| | Sbjct 3241 CCCAGTGCTGTATATCCTGGGACAAATCGACCTCTTCCGCCGTCCAAAACGAGGCCTCTG 3300 Query 24041 CACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGAAATAT 24086 | ||| |||||| |||||| | || || |||||||| || Sbjct 3301 CTTTCTTGTACATTTCCCAAATTTTGGGATACTGAATTGGAAACAT 3346 >seq368 Length=237284 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/131 (76%), Gaps = 4/131 (3%) Strand=Plus/Plus Query 23501 ACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACTAATCAATTCATTAGAAA 23560 |||| | || |||||||||||||| || || ||||| || ||| | ||||| || | Sbjct 177700 ACAAAAGGCAAGCAAAATCACAATGGAGTCCCTCATCTCTTGAAATAAGCTCATTTGAGA 177759 Query 23561 ATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATATTGCAGCAAATGATCCGG 23620 |||| || |||||||||| ||| | || |||| ||||||||||||| |||| | | | Sbjct 177760 ATGTCAAGCCTGGCATTATTCCCCTCTTCTTAAGCCAAAATATTGCA-CAAAAG---CTG 177815 Query 23621 AAAAGAAAATA 23631 | ||| ||||| Sbjct 177816 AGAAGGAAATA 177826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520904487521000