Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Genlisea_20aurea_20[genbank_20GCA_5F000441915.1_202013-07-31] 10,684 sequences; 43,357,795 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq993 120 3e-22 seq4164 116 3e-21 seq560 89.7 5e-13 >seq993 Length=3989 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 ||| | |||||| | | || | ||| | ||| | ||| || ||||| || | |||||| Sbjct 3163 TTAGAATCCTCCACGGAGACGAAGCACAAGGTGAAGAGTGGACTCCTTCTGAATGTTATA 3222 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 ||| | ||| | ||| |||||||| || || |||| || | || ||||| || Sbjct 3223 ATCTGCAAGAGTCCTTCCATCTTCCAGCTGCTTCCCAGCAAAAATCAGCCTCTGCTGGTC 3282 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| || |||||||| ||||| | |||||| ||||||||| | ||| || || | | Sbjct 3283 TGGTGGGATACCTTCCTTGTCTTGAATTTTCGCCTTGACGTTGTCGATGGTATCGGAGCT 3342 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | |||||| || || || || ||||| ||||| ||||||||||| Sbjct 3343 CTCCACCTCCAACGTGATCGTCTTCCCGGTCAGAGTCTTCACGAAGATCTGCAT 3396 Score = 116 bits (128), Expect = 3e-21 Identities = 169/236 (72%), Gaps = 6/236 (3%) Strand=Plus/Plus Query 94777 CACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATC 94836 || |||||| | | | || ||||||||| | ||| ||||| || | ||| ||||| Sbjct 3394 CATTCCTCCACGAAGCCTCAGCACCAAGTGAAGAGTGCTCTCCTTCTGGATGTTGTAATC 3453 Query 94837 -GCTCATAGTGTTGGA--ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 || ||||| | |||||||||||| || ||| | ||||| | || |||||||| Sbjct 3454 AGCG---AGTGTACGGCCATCCTCCAGCTGCTTGCCGGCGAAGATGAGCCTCTGCTGATC 3510 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| || || ||||| ||||| | || || ||||||||| | ||| || || | | Sbjct 3511 TGGCGGGATGCCTTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATCGTATCCGAGCT 3570 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || | || |||||||| || || || || |||||||| |||||||||| Sbjct 3571 TTCGACTTCCAAGGTTATGGTTTTCCCGGTGAGGGTCTTCACAAATATCTGCATGC 3626 Score = 114 bits (126), Expect = 1e-20 Identities = 149/206 (72%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| ||||| | ||| | |||||||||||| Sbjct 3649 GTGGAGAGTGGACTCCTTCTGGATGTTGTAATCAGCGAGTGTGCGGCCATCCTCCAGCTG 3708 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 |||||| ||||||| || || ||||| || || || ||||| || ||||| | ||| || Sbjct 3709 CTTTCCGGCAAAGATCAACCTCTGCTGGTCCGGTGGGATACCCTCCTTGTCCTGAATCTT 3768 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | ||| || || | | ||||| || | ||||||||||| || || Sbjct 3769 AGCCTTCACGTTGTCGATTGTATCTGAGCTCTCGACCTCCAGGGTGATGGTTTTCCCTGT 3828 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 || || || || || |||||||||| Sbjct 3829 GAGCGTCTTGACGAAAATCTGCATGC 3854 >seq4164 Length=15189 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 ||||| || | || |||||||| || | ||| || ||| | ||| | ||||| Sbjct 209 ACCAAATGGAGGGTCGATTCCTTCTGGATGTTGTAGTCGGCAAGGGTGCGGCCGTCCTCG 150 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||||||| | ||||| | || || || ||||| || || |||||||| || | Sbjct 149 AGCTGTTTTCCGGCGAAGATAAGCCTCTGTTGGTCTGGGGGTATTCCTTCTTTATCCTGG 90 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||||||| ||| ||||| | | || || |||| ||||| ||||| Sbjct 89 ATCTTGGCCTTGACGTTATCGATTGTGTCGGAGCTTTCAACCTCAAGGGTGATAGTTTTG 30 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || ||||||||||| ||||||||||| Sbjct 29 CCGGTGAGAGTTTTCACGAAGATCTGCAT 1 Score = 116 bits (128), Expect = 3e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| ||| | |||||||||||| || | |||||| ||| || || | ||||| Sbjct 437 ACCAGGTGGAGAGTAGATTCCTTCTGAATGTTATAGTCGGCCAAGGTCCGGCCGTCCTCG 378 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 |||||||||||| | ||||| | || || || || || || |||||||| ||||| | Sbjct 377 AGCTGTTTTCCGGCGAAGATCAGCCTCTGTTGGTCCGGCGGGATACCTTCCTTGTCCTGG 318 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| ||| | ||| ||||| | | || || || | ||||| || ||| Sbjct 317 ATCTTGGCCTTCACGTTGTCGATGGTGTCGGAGCTTTCCACTTCTAGGGTGATCGTCTTT 258 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || |||||||| ||||| ||||| Sbjct 257 CCGGTGAGGGTTTTCACGAAGATTTGCAT 229 >seq560 Length=29322 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| |||||||| || | ||| || ||| | || | ||||| || || Sbjct 29116 GTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCGAGCGTCCGGCCGTCCTCGAGTTG 29175 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || ||| | || || | | |||||||| || ||||| ||||| || || | ||| || Sbjct 29176 CTTACCGGCGAAAATGAGCCGCTGCTGATCCGGCGGAATTCCTTCCTTATCCTGAATCTT 29235 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||||| ||| | ||| ||||| | | || || || | |||||| || || || || Sbjct 29236 CGCCTTCACGTTGTCGATCGTGTCGGAGGATTCAACCTCCAACGTGATCGTCTTCCCCGT 29295 Query 94984 AAGAGTTTTCACAAAGATCTGCAT 95007 || |||||||| ||||||||||| Sbjct 29296 TAGGGTTTTCACGAAGATCTGCAT 29319 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448231330710240