Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq3 152 5e-32 seq16 100 3e-16 seq19 82.4 8e-11 >seq3 Length=45779434 Score = 152 bits (168), Expect = 5e-32 Identities = 477/723 (66%), Gaps = 17/723 (2%) Strand=Plus/Minus Query 16676 TGGTAATCGCTAACGCGTTTTTCGAAAAAGTTAGTTTTGCCCTCTAGAGATATATTCTCC 16735 ||||| || | |||||| || || || ||||||||||| |||| || || ||| |||| Sbjct 40573539 TGGTACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTGAAGCGAAATAAGCTCC 40573480 Query 16736 ATGAAATCAAAAGGATTAGTAGCTGAAAATATTTTAGAGTACCCCAGTTCGGCGATTAAT 16795 || ||||||| ||||| ||| | | || |||| || | | | || Sbjct 40573479 ATCCAATCAAAGGGATTCTGAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAAC 40573420 Query 16796 CTATCCGCTACAAATTCTATATATTGGCACATTAATTCGCAGTTCATTCCTATAAGACGT 16855 | |||||| ||||| || ||||| | | ||| || || | |||||| || | | ||| Sbjct 40573419 CGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCA-ACGC 40573361 Query 16856 AC-CGGAAGAGCTTCCGTCAAAAA-TCGTTGCTCTATAACAACCGCTTCCTTAATAATAC 16913 || |||||| || || || ||| || | ||| || | ||||| || | ||| | Sbjct 40573360 ACACGGAAGCGCGTCGCACACAAACTCCCT-CTCAATCTCCACCGCGTCACGCACAAT-C 40573303 Query 16914 TAGCA-ACTCGTTCCTCGGACGGTGTATGTT--TAAGATGTTTAAACATCAGACATGCGA 16970 | | || || ||||| || | | || | ||| | ||| ||||| |||| Sbjct 40573302 TCCCTCACGCGCTCCTC--ACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGACACGCGA 40573245 Query 16971 AATCGCAATGTAATCCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCA 17030 | ||||| || | ||||| |||| ||| |||||||| || || || | ||| |||| Sbjct 40573244 AGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCA 40573185 Query 17031 TCTTTCCTCGTTTCTTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCT 17090 | || || ||||| | ||||||||||||| || || || |||||||| |||| Sbjct 40573184 TTAACCCACGCTTCTTGAGCCAAAATATCGCGCAAAAGCTTCCGGAGAAGAATATTCCCT 40573125 Query 17091 CGACGGATGCAAACGCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGAATCCATT 17150 ||||| | || || || | | || || ||| | | ||| | | ||||| Sbjct 40573124 CGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGAT---TCTGAGGCATCGATCCAGC 40573068 Query 17151 TCTGCACCCACTCGGCTTTTTGCTTTATGCAATCCATCGTTTCTATGGCCTTAAATAATT 17210 | |||||| |||||||| | ||||| || || | |||||| ||| | Sbjct 40573067 GGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGAC 40573008 Query 17211 TCTCTTTTTCCTGTAG-GTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAG 17269 | |||||| ||| | ||| | || || || || | ||| |||||||||||||||||| Sbjct 40573007 GATTTTTTTC-TGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTTCGGAG 40572949 Query 17270 TGTATGTTCTCCATGGCTATCTGAAATCCGTA-AAAGCATCGGGCTTCCGCTATTTGAAC 17328 || || || || ||||| || || || ||||| ||||| ||||| |||| | ||| | Sbjct 40572948 TGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAAGCG-CGGGCCTCCGGGAGTTGGAT 40572890 Query 17329 TTCCACGTAGAATCGTTCCGCTAGATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAA 17388 ||| | ||| || | || || ||||| |||||||||||| |||||||| || Sbjct 40572889 TTCTTTGGTGAAGCGGCCGGCGAGGTTTTCTAGGACGATGCCGTCGGAGGCGGCGAAGAA 40572830 Query 17389 CGC 17391 || Sbjct 40572829 GGC 40572827 >seq16 Length=37887014 Score = 100 bits (110), Expect = 3e-16 Identities = 119/159 (75%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||| ||| ||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 5527085 ATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGAATGTTCTCGATGGCGATCTGG 5527144 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCC-ACGTAGAATCGTTCCGCTAG 17352 || ||||| ||| ||||| || | ||||| | |||| ||| ||| || | || || Sbjct 5527145 AAGCCGTAGAAGGCGCGGGCCTCGGGGATTTGGATTTCCTTCGT-GAAGCGCCCAGCGAG 5527203 Query 17353 ATTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || || |||||||||||| |||||||| || || Sbjct 5527204 GTTCTCAAGTACGATGCCGTCGGAGGCGGCGAAGAAGGC 5527242 >seq19 Length=50746504 Score = 82.4 bits (90), Expect = 8e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 17234 ATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCATGGCTATCTGA 17293 || || || |||| ||| ||||||||||| |||||||| |||||||| ||||| ||||| Sbjct 32415774 ATGTAGGTTTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGG 32415715 Query 17294 AATCCGTAAAAGCATCGGGCTTCCGCTATTTGAACTTCCACGTAGAATCGTTCCGCTAGA 17353 || ||||| ||| ||||| || | | || | ||| ||| || | || || Sbjct 32415714 AAGCCGTAGAAGGCCCGGGCCTCGGGGAGCTGGATCTCCTTTGTGAAGCGCCCGGCGAGG 32415655 Query 17354 TTTTCGTTCACGATGCCGTCGCTCGCGGCGAAAAACGC 17391 || ||| |||||||| ||| |||||||| || || Sbjct 32415654 TTCTCGAGGACGATGCCATCGGAGGCGGCGAAGAAGGC 32415617 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517537895039880