Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq19 96.9 4e-15 seq20 95.1 1e-14 seq6 89.7 6e-13 seq4 84.2 3e-11 >seq3 Length=45779434 Score = 111 bits (122), Expect = 2e-19 Identities = 233/343 (68%), Gaps = 6/343 (2%) Strand=Plus/Minus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| |||||||| || ||||| |||| || | ||||||||| || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGA 24252 || ||||||| |||||||| || ||||||||||| | |||||| | ||| || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCT--GTCATG 24310 | ||||| || || || || || | || | |||| | | || | ||| Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGC--GCTCCGCGAAGGATTCTGAGGCATC 40573076 Query 24311 TATCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATT 24370 ||||| | ||||| | ||| || || | | || || || || | ||| || Sbjct 40573075 GATCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCG 40573016 Query 24371 AAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACAT 24430 ||| ||| |||||||| | ||||| | || || || | | || || ||||| Sbjct 40573015 AAACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACAT 40572956 Query 24431 TTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 ||| || || || ||||| ||||| ||||| || ||||||||| Sbjct 40572955 TTCGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 40572913 >seq19 Length=50746504 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 24131 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 24190 || ||| ||||||||||||||||| || ||||| | | ||| | |||||| || || || Sbjct 32416637 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 32416578 Query 24191 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 24249 ||| || ||||| || || || ||||| ||||| || || | |||| || |||||| | Sbjct 32416577 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 32416519 Query 24250 AGAAAATTCCTT 24261 ||||||| |||| Sbjct 32416518 AGAAAATACCTT 32416507 >seq20 Length=47900577 Score = 95.1 bits (104), Expect = 1e-14 Identities = 228/341 (67%), Gaps = 3/341 (1%) Strand=Plus/Plus Query 24134 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 24193 ||| ||||| ||| |||| || ||||| |||| || ||||| ||||| || ||||| Sbjct 3442305 ACACGCGAAGTCGTAGTGAAGCCCCTCATCTCGCGAGATGAATTCATTGGAGAAGGTGAG 3442364 Query 24194 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 24252 || | ||||| || ||||| || ||||||||||| | |||| || ||| || |||| Sbjct 3442365 CCCTGACATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 3442423 Query 24253 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTCTCCATAACCGGCGCTGTCATGTA 24312 | ||||||| || || || || || || | ||| | | | | | | | Sbjct 3442424 ATATTCCTTAGACGCAAGCGAATGCCATGAGGCGCTCTGCGAAGGATTCTGAGGCGTTGA 3442483 Query 24313 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 24372 || ||| | ||||| | ||| || || | | || || || || | ||| ||| || Sbjct 3442484 TCTACTGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCACGAA 3442543 Query 24373 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 24432 | | | | ||||||| | ||||| || || || | || || || ||||||| Sbjct 3442544 ACAAACAATTTTTTT-TGTGGAGTCTTTGGTGTAGGTTTCTAAGAAGAGGCTGTACATTT 3442602 Query 24433 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 24473 | || || || ||||| ||||| ||||| || ||||||||| Sbjct 3442603 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 3442643 >seq6 Length=51416163 Score = 89.7 bits (98), Expect = 6e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 54175 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 54234 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 12139145 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 12139204 Query 54235 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 54294 | ||| |||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 12139205 GACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTC 12139264 Query 54295 ACTAATTGATAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 54354 | ||| || | ||| || || || || ||| ||| | || || || || || Sbjct 12139265 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 12139324 Query 54355 ATCATAGATGCCCTCTATACTATCATCCATCATG 54388 ||||| || ||||||||||||||||| ||||| Sbjct 12139325 TTCATATATCCCCTCTATACTATCATCTTTCATG 12139358 >seq4 Length=52388848 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 54184 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 54243 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 48825097 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 48825038 Query 54244 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 54303 |||||| | ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 48825037 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 48824978 Query 54304 TAGACCTATCCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 54363 | ||| || || || || ||| ||| | || || || || || || || || Sbjct 48824977 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 48824918 Query 54364 GCCCTCTATACTATCATCCATCAT 54387 ||||||||||||||||| |||| Sbjct 48824917 CCCCTCTATACTATCATCTTTCAT 48824894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593712760969680