Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq13 111 1e-19 seq10 91.5 1e-13 seq17 89.7 4e-13 >seq13 Length=45874162 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || |||||||| || || || || ||| || || | | Sbjct 29046236 AATGCAAATCTTTGTTAAGACATTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTC 29046177 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || ||| || ||||| ||| | || ||| || Sbjct 29046176 TGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 29046117 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || || || || |||||| || ||| |||| |||||||| Sbjct 29046116 ACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAA 29046057 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| |||||||||||||| || ||| ||||| | || | || || ||| Sbjct 29046056 TATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 29046008 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28961 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 29020 ||||||||| || | || || ||||| || || || || ||| || || | | Sbjct 29059942 AATGCAAATCTTTGTTAAGACCTTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTC 29059883 Query 29021 AGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 29080 || || | | | || ||||| || ||| || ||||| ||| | || ||| || Sbjct 29059882 TGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 29059823 Query 29081 ACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAA 29140 |||||| ||||||||||| || || || || |||||| || ||| |||| |||||||| Sbjct 29059822 ACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAA 29059763 Query 29141 TATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 ||| |||||||||||||| || ||| ||||| | || | || || ||| Sbjct 29059762 TATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 29059714 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| || |||| || | Sbjct 23088173 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 23088114 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || ||||| || | ||| |||||| Sbjct 23088113 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 23088054 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || ||||| || |||||||| || ||| | ||| | || |||||||| Sbjct 23088053 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 23087994 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || |||||| ||||| | || || |||| || Sbjct 23087993 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 23087947 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || || ||||| ||| || |||| || | Sbjct 23083705 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 23083646 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || ||||| || || || ||||| || | || |||||| Sbjct 23083645 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCAGATCAG 23083586 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || || || || || || |||||||| || ||| | ||| | || |||||||| Sbjct 23083585 CAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 23083526 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||| || |||||| ||||| | || || |||| || Sbjct 23083525 ATTCAGAAGGAATCCACCCTTCACTTGGTGCTTCGTTTGAGAGGTGG 23083479 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | ||||| ||||| || || ||||| ||| || ||| || Sbjct 23087945 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 23087886 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| || || |||||| | || ||| ||| Sbjct 23087885 GATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 23087826 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| | ||| | || || || || Sbjct 23087825 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAAC 23087766 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACG 29176 || |||||||||||||| || ||| ||||||| || Sbjct 23087765 ATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCG 23087731 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || || ||||| ||| || |||| | Sbjct 23083477 ATGCAGATTTTCGTCAAGACTTTGACAGGAAAGACCATCACCTTGGAGGTGGAAAGTTCT 23083418 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | || || ||| ||||| || ||| | ||| ||| || Sbjct 23083417 GATACAATTGATAATGTGAAAGCCAAGATTCAGGATAAGGAGGGTATTCCCCCAGACCAG 23083358 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || || || || |||||| | ||| | || ||||| || Sbjct 23083357 CAGAGGCTTATCTTTGCCGGGAAGCAGCTTGAAGATGGAAGAACCCTTGCTGATTATAAC 23083298 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || ||||||||||||||| | ||| ||||||| ||| | || || || Sbjct 23083297 ATCCAGAAGGAATCTACTTTGCACTTGGTGTTGCGACTTCGTGGTGG 23083251 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || ||||| || ||| || ||| || Sbjct 29045095 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAAAGTTCA 29045036 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| ||| ||| Sbjct 29045035 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 29044976 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || |||||||| ||| | ||| | || || ||||| Sbjct 29044975 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 29044916 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 29190 |||||||| || |||||||||||| | || || || | || || |||| Sbjct 29044915 ATTCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGGT 29044867 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || ||||| || ||| || ||| || Sbjct 29059029 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAAACTATCACCTTGGAGGTTGAAAGTTCA 29058970 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| |||||| || || |||||| | ||| ||| ||| Sbjct 29058969 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 29058910 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | |||||||| || || |||||||| ||| | ||| | || || ||||| Sbjct 29058909 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 29058850 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGGT 29190 |||||||| || |||||||||||| | || || || | || || |||| Sbjct 29058849 ATTCAGAAAGAGTCTACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGGT 29058801 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| ||||| ||||| ||||| ||| || |||| || | Sbjct 23083933 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23083874 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | || || ||| || || ||||| | || || || Sbjct 23083873 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23083814 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||||||||| |||||||| || ||| || | ||||||||||| Sbjct 23083813 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23083754 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || |||||||| || || || Sbjct 23083753 ATCCAAAAGGAATCAACCCTCCA 23083731 Score = 82.4 bits (90), Expect = 7e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| |||||| | ||||| ||||| ||||| ||||| ||| || |||| || | Sbjct 23088401 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23088342 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | || || ||| || || ||||| | || || || Sbjct 23088341 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23088282 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||||||||||||||||| |||||||| || ||| || | ||||||||||| Sbjct 23088281 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23088222 Query 29142 ATTCAGAAGGAATCTACTCTTCA 29164 || || |||||||| || || || Sbjct 23088221 ATCCAAAAGGAATCAACCCTCCA 23088199 >seq10 Length=51566898 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 29055 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAA 29114 ||||| |||||| | || ||||| ||| | |||||||| || || || || ||||| Sbjct 4576923 GATAAGGAAGGTATTCCACCGGATCAGCAACGTCTTATCTTCGCCGGAAAGCAGTTGGAA 4576864 Query 29115 GATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 || || ||| | ||||||||||||||||| |||||||| || ||||| ||||| | Sbjct 4576863 GACGGCAGAACCCTCGCCGATTACAATATTCAAAAGGAATCGACGCTTCATCTGGTGCTT 4576804 Query 29175 CGATTACGAGGAGGG 29189 || | || |||||| Sbjct 4576803 CGTCTCCGCGGAGGG 4576789 Score = 84.2 bits (92), Expect = 2e-11 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || |||||||| || || || ||| || | Sbjct 4577244 ATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTCC 4577185 Query 29022 GAGACGGTGGCCGAT--CTT--AAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGA 29077 || || | |||| | | |||| || | || ||||| ||||| | || || Sbjct 4577184 GACACAAT---CGATAACGTGAAAGCCAAGA-TTCAAGATAAGGAAGGGATTCCTCCGGA 4577129 Query 29078 TCAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTA 29137 ||| ||| | | ||||| || || |||||||| ||||| || ||| | |||||||| Sbjct 4577128 TCAGCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTA 4577069 Query 29138 CAATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 29189 |||||| ||||| ||||| ||||| || ||||| | || | || |||||| Sbjct 4577068 CAATATCCAGAAAGAATCGACTCTGCATTTGGTGCTTCGTCTCCGCGGAGGG 4577017 >seq17 Length=41641078 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| ||||| ||||| ||| ||| ||| || | Sbjct 3124472 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAATCCTCG 3124531 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | || | ||| || || || || || ||| | || |||||| Sbjct 3124532 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGATCAG 3124591 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || |||||||| || ||| | ||| | || ||||||||| Sbjct 3124592 CAGAGGTTGATATTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAT 3124651 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||||||||| ||||| | ||| |||| | || ||| |||| || Sbjct 3124652 ATTCAGAAGGAGTCTACCTTACACTTGGTTCTTCGTTTAAGAGGTGG 3124698 Score = 89.7 bits (98), Expect = 4e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || |||||||| || ||||| ||| || ||| || Sbjct 3124700 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 3124759 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | || | || || ||| ||||| || ||| | ||| ||| || Sbjct 3124760 GATACCATAGACAATGTGAAAGCCAAGATTCAAGATAAGGAGGGTATCCCCCCAGACCAG 3124819 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || ||||||||||| || ||||| || |||||| ||| | || ||||| || Sbjct 3124820 CAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAAC 3124879 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 || |||||||||||||| || ||| |||| || Sbjct 3124880 ATCCAGAAGGAATCTACCCTGCACTTGGTTTT 3124911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428329782569105