Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq10 100 2e-16 seq13 98.7 8e-16 seq17 86.0 5e-12 >seq10 Length=51566898 Score = 100 bits (110), Expect = 2e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 ||||| |||||| | || ||||| ||| | |||||||| || || || || |||||| Sbjct 4576923 GATAAGGAAGGTATTCCACCGGATCAGCAACGTCTTATCTTCGCCGGAAAGCAGTTGGAA 4576864 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 || || ||| | |||||||||||||||||||||||||| || ||||| ||||| | Sbjct 4576863 GACGGCAGAACCCTCGCCGATTACAATATTCAAAAGGAATCGACGCTTCATCTGGTGCTT 4576804 Query 25248 CGATTACGAGGAGGG 25262 || | || |||||| Sbjct 4576803 CGTCTCCGCGGAGGG 4576789 >seq13 Length=45874162 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 ||||||||| || | || |||||||| || || || || ||| || || | | Sbjct 29046236 AATGCAAATCTTTGTTAAGACATTGACCGGAAAGACAATCACCCTTGAGGTCGAGAGCTC 29046177 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 || || | | | || | ||| || ||| || ||||| ||| | || ||| || Sbjct 29046176 TGACACCATTGACAATGTTAAGGCTAAGATTCAGGACAAAGAGGGTATCCCACCAGACCA 29046117 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| ||||||||||| || || || | |||||| || ||| |||| |||||||| Sbjct 29046116 ACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAAGATGGCAGAACCTTGGCTGATTACAA 29046057 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 ||| || ||||||||||| || ||| ||||| | || | || || ||| Sbjct 29046056 TATCCAGAAGGAATCTACCCTCCACTTGGTGCTCCGTCTTCGTGGTGGG 29046008 Score = 95.1 bits (104), Expect = 1e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 25128 GATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAA 25187 || ||||| ||| | || ||| |||||||| ||||||||||| || || || | ||| Sbjct 29059848 GACAAAGAGGGTATCCCACCAGACCAACAAAGGCTTATCTTTGCAGGAAAGCAGCTAGAA 29059789 Query 25188 GATTCCAAAACTATGGCCGATTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTA 25247 ||| || ||| |||| ||||||||||| || ||||||||||| || ||| ||||| | Sbjct 29059788 GATGGCAGAACCTTGGCTGATTACAATATCCAGAAGGAATCTACCCTCCACTTGGTGCTC 29059729 Query 25248 CGATTACGAGGAGGG 25262 || | || || ||| Sbjct 29059728 CGTCTTCGTGGTGGG 29059714 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| | ||||| ||||| ||||| ||||| ||| || |||| || | Sbjct 23083933 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23083874 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || ||| || || ||||| | || || || Sbjct 23083873 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23083814 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||||||||| |||||| | || ||| || | ||||||||||| Sbjct 23083813 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23083754 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| || || || Sbjct 23083753 ATCCAAAAGGAATCAACCCTCCA 23083731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| || ||| | ||||| ||||| || || ||||| ||| || ||| || Sbjct 23087945 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 23087886 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | || | || || ||| || || |||||| | || ||| ||| Sbjct 23087885 GATACCATAGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCACCAGACCAA 23087826 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || ||||||||||| || ||||| | |||||| | ||| | || || || || Sbjct 23087825 CAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAAC 23087766 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACG 25249 || || ||||||||||| || ||| ||||||| || Sbjct 23087765 ATCCAGAAGGAATCTACCCTGCACTTGGTGTTGCG 23087731 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 ||||| |||||| | ||||| ||||| ||||| ||||| ||| || |||| || | Sbjct 23088401 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23088342 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | | | | || || ||| || || ||||| | || || || Sbjct 23088341 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23088282 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||||||||||||||||| |||||| | || ||| || | ||||||||||| Sbjct 23088281 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23088222 Query 25215 ATTCAAAAGGAATCTACTCTTCA 25237 || ||||||||||| || || || Sbjct 23088221 ATCCAAAAGGAATCAACCCTCCA 23088199 >seq17 Length=41641078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| || |||| || ||||| ||||| ||||| ||| ||| ||| || | Sbjct 3124472 ATGCAAATCTTTGTCAAGACTTTGACTGGCAAGACCATCACCCTCGAGGTCGAATCCTCG 3124531 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || || | | || ||||| || || || || || ||| | || |||||| Sbjct 3124532 GACACCATTGATAATGTCAAGGCCAAGATCCAGGACAAGGAGGGTATCCCTCCAGATCAG 3124591 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || || | || ||||| || |||||| | || ||| | ||| | || ||||||||| Sbjct 3124592 CAGAGGTTGATATTTGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAT 3124651 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| ||||| ||||| | ||| |||| | || ||| |||| || Sbjct 3124652 ATTCAGAAGGAGTCTACCTTACACTTGGTTCTTCGTTTAAGAGGTGG 3124698 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410790837156074