Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq1 116 2e-21 seq20 111 1e-19 seq15 102 5e-17 seq2 102 5e-17 seq10 98.7 6e-16 seq9 98.7 6e-16 seq7 95.1 8e-15 >seq1 Length=56831395 Score = 116 bits (128), Expect = 2e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 ||||| || || | || || ||||| | || || ||||| ||||||||||||| Sbjct 3099083 CCGCCACGGAGGCGGAGGACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3099024 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 3099023 AGGGTGCGGCCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 3098964 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || || Sbjct 3098963 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCCGAAGACTCCACC 3098904 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 |||| |||||| ||||| || || || |||||||| ||||||||||||| Sbjct 3098903 TCCAACGTGATCGTTTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG 3098855 >seq20 Length=47900577 Score = 111 bits (122), Expect = 1e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | |||||| || ||||| ||||||||||| | || |||| |||| Sbjct 38034157 AGGACGAGGTGAAGAGTACTCTCCTTCTGAATGTTGTAGTCAGCAAGGGTACGGCCGTCC 38034098 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||||| || ||||||||||| || |||||||| ||| | | |||||||| Sbjct 38034097 TCAAGTTGCTTTCCGGCGAAAATGAGACGTTGCTGGTCCGGGGGGATTCCTTCCTTGTCC 38034038 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | || | ||| || || | |||||||| Sbjct 38034037 TGGATCTTGGCCTTGACGTTGTCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTC 38033978 Query 34358 TTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTCGA 34396 ||||||||||| || || || |||||||||||| |||| Sbjct 38033977 TTGCCGGTGAGGGTCTTGACGAAGATCTGCATCTGTCGA 38033939 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || ||| |||| || | |||||| || ||||| Sbjct 38034365 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTTCCGGCGAA 38034306 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | ||||||||| ||||| ||| | | Sbjct 38034305 GATGAGACGTTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 38034246 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || | |||| ||| || || | || ||||| ||||||||||| || || || Sbjct 38034245 ATCGATGGTGTCGGAGCTTTCAACCTCTAGGGTTATGGTCTTGCCGGTGAGTGTCTTAAC 38034186 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 38034185 GAAGATCTGCAT 38034174 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| ||||||||||| | Sbjct 38034628 CCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCA 38034569 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || || |||| || | |||||| || ||||| || |||| ||||||||| ||| Sbjct 38034568 AGGGTGCGTCCGTCCTCGAGCTGCTTCCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 38034509 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| |||||| Sbjct 38034508 ATTCCCTCCTTGTCCTGAATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTTTCGACT 38034449 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || || || ||||||||||| Sbjct 38034448 TCTAGGGTAATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 38034402 >seq15 Length=51756343 Score = 102 bits (112), Expect = 5e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 10430800 CCGCCGCGGAGGCGGAGGACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 10430741 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || ||| |||| |||| |||||| || ||||| || || |||||||||| || |||| Sbjct 10430740 AGGGTGCGGCCGTCCTCCAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGG 10430681 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | || | || | || || || Sbjct 10430680 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATTGTGTCCGATGACTCTAC 10430622 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || |||||||| || |||||||| Sbjct 10430621 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCAT 10430574 >seq2 Length=48577505 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 3323577 CCACCGCGGAGACGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCG 3323518 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| |||| |||||| || ||||| ||||| ||||||||||| || Sbjct 3323517 AGGGTGCGGCCGTCCTCCAGCTGCTTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGG 3323458 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | || |||||||| ||||| ||| | | | | || | || | || || || Sbjct 3323457 ATGCCTTCCTTGTCCTGGATCTTGGCCTTCACGTTGTCGATGGTGTCAGAAGACTCCACC 3323398 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCG 34391 || | ||||| || || || || || |||||||| ||||||||||||| Sbjct 3323397 TCAAGGGTGATCGTCTTACCCGTTAGGGTTTTCACGAAGATCTGCATCG 3323349 >seq10 Length=51566898 Score = 98.7 bits (108), Expect = 6e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || || || || | || ||||| ||| | ||| || ||||| ||||||||||| | Sbjct 47989806 CCACCACGAAGACGCAACACCAAGTGGAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCA 47989865 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || ||| |||| || | ||||||||| ||||| || |||| ||||||||| ||| Sbjct 47989866 AGGGTACGTCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGCCTCTGCTGGTCTGGGGGG 47989925 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| ||||| ||| | | | | || | |||| ||||| Sbjct 47989926 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTGTCGATGGTGTCGGAGCTCTCGACT 47989985 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || ||||||||||| || || || ||||||||||| Sbjct 47989986 TCTAGGGTTATAGTCTTGCCGGTGAGGGTCTTAACGAAGATCTGCAT 47990032 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| ||||| ||||||||||||| || || |||| || | ||||| || ||||| Sbjct 47990069 TTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGCCCGTCCTCAAGTTGCTTTCCGGCGAA 47990128 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| ||| | | ||||||||| ||||| ||| | | Sbjct 47990129 GATGAGACGTTGCTGGTCTGGGGGGATTCCCTCCTTGTCCTGGATCTTGGCCTTGACGTT 47990188 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | || | |||||| || | || ||||||||||| |||||||| || || Sbjct 47990189 GTCAATGGTGTCAGAGCTTTCGACCTCTAGGGTTATGGTTTTGCCAGTGAGAGTCTTGAC 47990248 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 47990249 GAAGATCTGCAT 47990260 Score = 89.7 bits (98), Expect = 3e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||||| || |||| |||| || | |||||| || ||||| Sbjct 47990298 TCCTTCTGGATGTTGTAGTCGGCGAGGGTACGGCCGTCCTCGAGCTGCTTTCCGGCGAAG 47990357 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 ||||| || ||||| || ||| | | |||||||| ||||| ||| | | | Sbjct 47990358 ATGAGACGTTGCTGATCCGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTGACGTTG 47990417 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | || | ||| || || | |||||||| || |||||||| || || || Sbjct 47990418 TCGATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTTCCGGTGAGGGTCTTGACG 47990477 Query 34379 AAGATCTGCATC 34390 |||||||||||| Sbjct 47990478 AAGATCTGCATC 47990489 Score = 86.0 bits (94), Expect = 4e-12 Identities = 162/236 (69%), Gaps = 8/236 (3%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | |||||||| || | || ||| || || || ||||| |||| Sbjct 4576790 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCG 4576849 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | |||| ||||||||||| || ||||| || || || ||||| || || Sbjct 4576850 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 4576909 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTC----GATTC 34338 | | ||||| || ||||| ||||| | |||||| | ||| || || Sbjct 4576910 ATACCTTCCTTATCCTGGATCTTC-GCTTTCAC---GTTATCGATTGTGTCAGAGGACTC 4576965 Query 34339 GACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATCGCTC 34394 || || | ||| || ||||||||||| || |||||||| |||||||||||| ||| Sbjct 4576966 TACCTCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATCCCTC 4577021 >seq9 Length=50189283 Score = 98.7 bits (108), Expect = 6e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 |||||||| || | || || ||||| | || || ||||| ||||||||||||| Sbjct 1934963 CCGCCGCGGAGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCA 1934904 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGT-CGACGGG 34281 || || |||| |||| |||||| || ||||| || || |||||||| | || |||| Sbjct 1934903 AGGGTGCGCCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGG 1934844 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | || ||||||||| ||||| ||| | || | | |||| || | || || || Sbjct 1934843 -ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTGTCGATCGTGTCCGAAGACTCTAC 1934785 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || || || || || || || |||||||| || |||||||| Sbjct 1934784 CTCTAGGGTTATCGTCTTCCCCGTTAGGGTTTTCACGAATATCTGCAT 1934737 >seq7 Length=44630203 Score = 95.1 bits (104), Expect = 8e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || |||||||| | ||||||| ||| | ||| |||||| || |||||||| || | | Sbjct 36856042 CCACCGCGCAGACGGAGCACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCC 36855983 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 | ||| | || || | ||| ||||| || |||||||||| ||| ||||| || Sbjct 36855982 AAGGTTCGGCCATCTTCAAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGG 36855923 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342 | | ||||||||| |||||| ||| | || | | || | || | || || Sbjct 36855922 ATACCCTCCTTGTCTTGGATCTTTGCCTTCACATTGTCAATTGTGTCTGAGCTCTCTACC 36855863 Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 |||| || ||||| || || || || || ||||||||||| ||||| Sbjct 36855862 TCCAAAGTAATGGTCTTCCCAGTAAGGGTCTTCACAAAGATTTGCAT 36855816 Score = 91.5 bits (100), Expect = 1e-13 Identities = 164/235 (70%), Gaps = 10/235 (4%) Strand=Plus/Minus Query 34160 AATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCG 34219 || || || || || | || ||| ||||| | |||| |||||||| ||||||||||| Sbjct 36856501 AACCCACCACGAAGACGCAACACAAGGTGAAGAGTAGACTCTTTCTGAATGTTGTAGTCA 36856442 Query 34220 GACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACG 34279 | || | | || ||||| ||||| || || || || | || ||||||||| Sbjct 36856441 GCAAGAGTCCTTCCATCCTCCAATTGCTTCCCAGCAAATATCAACCTCTGCTGGTCTGGT 36856382 Query 34280 GGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTC-GA-- 34335 || | | ||||||||| || ||||||||| | || |||||| | ||| || Sbjct 36856381 GGGATACCCTCCTTGTCCTGGAT-TTTTGCTTTGACAT----TATCGATTGTGTCTGAGC 36856327 Query 34336 -TTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 ||| || |||| || || || ||||| || | ||| ||||||||||||||||| Sbjct 36856326 TTTCAACTTCCAAGGTAATAGTCTTGCCTGTCAAAGTCTTCACAAAGATCTGCAT 36856272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323067310508960