Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq4 107 4e-18 seq6 98.7 2e-15 seq5 98.7 2e-15 seq8 95.1 3e-14 seq19 86.0 1e-11 >seq4 Length=52388848 Score = 107 bits (118), Expect = 4e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 248799 CTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCT 248858 ||| | || ||| || || || |||| |||| |||||||| || |||| || || || Sbjct 48824502 CTATGACAGAGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCT 48824561 Query 248859 CCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGT 248918 | | || || | || ||| | |||||| | ||| |||||||||||| | || ||||| Sbjct 48824562 CTTGAAGGTTCAAGGGAAGGTTGTGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGT 48824621 Query 248919 CGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTACACCGGAATGAGTGAACG 248978 ||||||||||||||||||||||| | || | || ||| | ||| | |||| Sbjct 48824622 TGGGATTCACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACG 48824681 Query 248979 CTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 ||| | || ||||| | ||||| || ||||| || || || Sbjct 48824682 ATGGTTTACTCATGCATCTCCGACACTTTTCAATGCTGGAAC 48824723 >seq6 Length=51416163 Score = 98.7 bits (108), Expect = 2e-15 Identities = 165/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 248782 CTGGACGGCGCGATTGACTACGGCAAAGATTTGGAGTACGATTTCTTTGCTTTCAAAACG 248841 || ||| ||| ||| ||| | || || || || || |||| |||| |||||||| Sbjct 12139762 CTAGACAGCGAGATAATCTATGACAGGGACTTTGACTATGATTATTTTGGATTCAAAACC 12139703 Query 248842 CTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATTCAGCACATG 248901 || |||| || || ||| | || || | || || | ||||| | ||| |||||| Sbjct 12139702 CTTGAGAGGTCTTACCTCTTGAAGGTTCAAGGGCAGGTTTTGGAAAGGCCTCAACACATG 12139643 Query 248902 TTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTCGAGACGTAC 248961 |||||| | || ||||| ||||||||||||||||||||||| | || | || ||| Sbjct 12139642 TTGATGAGGGTTGCTGTTGGGATTCACAAGGATGACATAGATTCTGCTGTCAAAACTTAC 12139583 Query 248962 ACCGGAATGAGTGAACGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTAC 249020 | ||| | |||| ||| | || ||||| | ||||| || ||||| || || || Sbjct 12139582 CACATGATGTCTCAACGATGGTTCACCCATGCATCTCCGACACTTTTCAATGCTGGAAC 12139524 >seq5 Length=42234498 Score = 98.7 bits (108), Expect = 2e-15 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 248809 GATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATT 248868 || || || || |||| ||||| ||||||||| || |||| || || ||| | || || Sbjct 37338368 GACTTTGACTATGATTACTTTGGTTTCAAAACTCTTGAGAGGTCATACCTCTTGAAGGTT 37338309 Query 248869 GATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCAC 248928 | || ||| | |||||| | |||||||||||||||| | || ||||| || ||||| Sbjct 37338308 CAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAATTCAT 37338249 Query 248929 AAGGATGACATAGA 248942 ||||||||||| || Sbjct 37338248 AAGGATGACATTGA 37338235 >seq8 Length=47837022 Score = 95.1 bits (104), Expect = 3e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 248808 AGATTTGGAGTACGATTTCTTTGCTTTCAAAACGCTGGAGAAATCGTATCTCCTCAAAAT 248867 ||| || || || |||| ||||| ||||||||| || |||| || || |||| || | Sbjct 11048186 AGACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCATACATCCTGAAGGT 11048127 Query 248868 TGATGGCAAGATCGTGGAACGAATTCAGCACATGTTGATGCGAGTGGCTGTCGGGATTCA 248927 | | || ||| | |||||| | |||||||||||||||| | || | ||| || ||||| Sbjct 11048126 TCAAGGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGTTGTTGGAATTCA 11048067 Query 248928 CAAGGATGACATAGA 248942 ||||||||||| || Sbjct 11048066 TAAGGATGACATTGA 11048052 >seq19 Length=50746504 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 157274 TTCTCAAAAAAGTTGGTCTTTCCCTGGAGAGAAATCATGTCCATCCACTCGAATGGGTTG 157333 ||||| || ||||||||||||||||| || ||||||| |||||||| ||||| ||||| Sbjct 32416903 TTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAAATCAGCTCCATCCAATCGAACGGGTTC 32416844 Query 157334 -GCGCAGTTGTACACCTTGTCGTACCCCAGCTGGTTCAGCCAGTAGTCCGCCACAAACTT 157392 | || ||||||||||| || |||| ||| |||| | || |||||||||| Sbjct 32416843 TGAACA-TTGTACACCTTCCCGCACCCAAGCGCCCCCAGCAACCGATCTGCCACAAACTC 32416785 Query 157393 GATGTA 157398 ||||| Sbjct 32416784 AATGTA 32416779 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073750014660288