Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq13 102 6e-17 seq17 98.7 8e-16 seq10 89.7 4e-13 seq7 89.7 4e-13 >seq13 Length=45874162 Score = 102 bits (112), Expect = 6e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || |||||||| ||||| |||||||| ||||| Sbjct 23088175 CCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCGGCA 23088234 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | |||||| |||||| |||||||||| || || || || Sbjct 23088235 AGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 23088294 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | |||| | || ||| ||||| || || Sbjct 23088295 ATCCCTTCCTTGTCTTGAATCT-TAGCTTTTACGTTGTCAATGGTGTCGGAGGATTCCAC 23088353 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||||||||| |||||||| || || ||||| Sbjct 23088354 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTTACGAATATCTGCAT 23088401 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | || || |||||||| ||||| |||||||| ||||| Sbjct 23083707 CCACCCCTGAGGCGAAGCACGAGATGGAGGGTTGATTCCTTTTGGATGTTGTAATCGGCA 23083766 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || ||| || | |||||| |||||| |||||||||| || || || || Sbjct 23083767 AGGGTGCGACCATCCTCAAGTTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 23083826 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTG-CAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | |||| | || ||| ||||| || || Sbjct 23083827 ATCCCTTCCTTGTCTTGAATCT-TAGCTTTTACGTTGTCAATGGTGTCGGAGGATTCCAC 23083885 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | ||||||||||| ||||| || || || ||||| Sbjct 23083886 CTCAAGGGTGATGGTCTTGCCGGTCAAAGTTTTCACGAATATCTGCAT 23083933 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||| || || || ||||| || |||| ||| | | |||| Sbjct 29046024 AGCACCAAGTGGAGGGTAGATTCCTTCTGGATATTGTAATCAGCCAAGGTTCTGCCATCT 29046083 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | || || || ||| ||||||| |||||||| || || | || || || || Sbjct 29046084 TCTAGCTGCTTTCCTGCAAAGATAAGCCTTTGTTGGTCTGGTGGGATACCCTCTTTGTCC 29046143 Query 18234 GCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTT 18293 ||| | ||| || | ||| |||||| | |||| |||| |||||| | Sbjct 29046144 TGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCGACCTCAAGGGTGATTGTC 29046203 Query 18294 TTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || ||||||||||| || ||||| ||||||||| Sbjct 29046204 TTTCCGGTCAATGTCTTAACAAAGATTTGCATT 29046236 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||| || ||||||||||| || || | ||| | | ||| Sbjct 23087961 AAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATC 23088020 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 || | |||||| || ||| | || || || || ||||| ||| | ||| || || || Sbjct 23088021 CTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGGATGCCCTCTTTGTC 23088080 Query 18233 GGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 || | ||| || | ||| ||||| || || |||| ||||||| | Sbjct 23088081 CTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGGT 23088140 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || |||||||| || || ||||| |||||||| Sbjct 23088141 CTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23088173 >seq17 Length=41641078 Score = 98.7 bits (108), Expect = 8e-16 Identities = 160/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || |||| || | ||| || | ||| || || ||||| ||||| |||||||||||||| Sbjct 3124470 CCACCCCTGAGGCGAAGCACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCA 3124411 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| || ||| || | ||||| |||||| |||||||||| || || || || Sbjct 3124410 AGGGTTCGACCATCCTCAAGCTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGG 3124351 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||||| || ||| | | || || || | | | ||||| || ||| Sbjct 3124350 ATCCCTTCCTTGTCTTGAATCT-TAGCTTTCACGTTATCGATGGTGTCGGAGGACTCCAC 3124292 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| ||||||| | || |||||||| ||||| || || || ||||| Sbjct 3124291 CTCAAGGGTGATGGTCTTACCGGTCAAAGTTTTCACGAAGATCTGCAT 3124244 >seq10 Length=51566898 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 ||||| || || | ||| |||| ||||| || ||||| |||||||| ||||| ||||| Sbjct 4576790 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCG 4576849 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | ||| | | |||||||| || || || || ||||||| | ||| |||||| || Sbjct 4576850 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 4576909 Query 18219 ACGCCTTCCTTATC 18232 | ||||||||||| Sbjct 4576910 ATACCTTCCTTATC 4576923 >seq7 Length=44630203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 || |||| ||| || || ||||||||||| |||||||| || |||| ||| | |||| Sbjct 36855799 AGCACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGGTTCGGCCATCT 36855740 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCG 18233 || | |||||||| ||| | || || || ||||| || || | ||||| || || Sbjct 36855739 TCAAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCC 36855680 Query 18234 GCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCT 18292 ||| | | || ||||| | ||| ||||||| | ||| |||| ||||||| | Sbjct 36855679 TGAATCT-TGGCTTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCAAGGGTGATGGT 36855621 Query 18293 TTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 || || || | || || ||||| |||||||| Sbjct 36855620 CTTTCCAGTGAGAGTCTTGACAAAGATTTGCAT 36855588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379338493703295