Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq13 125 6e-24 seq10 118 9e-22 seq7 93.3 4e-14 seq17 89.7 5e-13 >seq13 Length=45874162 Score = 125 bits (138), Expect = 6e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || || |||||||| || | || || || | || Sbjct 25114913 CATGCAAATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCCTC 25114854 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| |||| | || ||| | || ||||||||||||| | || || ||||| Sbjct 25114853 TGACACCATCGATAACGTGAAAGCTAAGATCCAGGACAAGGAAGGCATTCCACCAGACCA 25114794 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || |||||| | |||||| | || | |||||| || Sbjct 25114793 GCAGCGCTTGATCTTCGCCGGAAAACAGCTCGAAGACGGCAGAACCCTCGCCGATTACAA 25114734 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| ||||||||||| ||||||||||| ||| |||| Sbjct 25114733 TATTCAGAAAGAATCGACGCTTCATCTGGTGCTTCGACT 25114695 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || |||||||| || | || || || | Sbjct 25115143 AATATGCAGATCTTCGTCAAAACCCTAACCGGTAAAACGATTACGCTAGAGGTCGAGTCC 25115084 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| |||| | || ||| | ||| |||||||||||| | || || || Sbjct 25115083 TCCGACACAATCGATAACGTGAAAGCTAAAATCCAAGACAAGGAAGGCATTCCACCGGAT 25115024 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||||||| | || ||||| || ||||| | |||||| | ||| | |||||| Sbjct 25115023 CAGCAGCGTTTGATCTTCGCCGGTAAACAACTCGAAGACGGCAGAACTCTCGCCGATTAC 25114964 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||||||||| || || || || || Sbjct 25114963 AATATCCAGAAAGAATCGACGCTCCACCTCGTCCT 25114929 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || |||||||| ||| |||| ||||| || |||||| | || || ||| | ||| Sbjct 23088401 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23088342 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||| | || || |||||| Sbjct 23088341 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23088282 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| | || || | || | |||||| ||| Sbjct 23088281 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23088222 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| || || ||||| || ||| | || ||||| || Sbjct 23088221 ATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGG 23088175 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| ||||||| ||||| |||||| | || |||||| || Sbjct 29045095 ATGCAGATCTTTGTGAAGACTTTGACAGGAAAAACTATCACCTTGGAGGTTGAAAGTTCA 29045036 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | |||| |||||||||||| | || || ||||| Sbjct 29045035 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 29044976 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||| || | |||| | || || ||| Sbjct 29044975 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 29044916 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| || |||||||| || || Sbjct 29044915 ATTCAGAAAGAGTCTACTCTTCACCTTGT 29044887 Score = 98.7 bits (108), Expect = 9e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||| ||||||| ||||| |||||| | || |||||| || Sbjct 29059029 ATGCAGATCTTTGTGAAGACTTTGACAGGGAAAACTATCACCTTGGAGGTTGAAAGTTCA 29058970 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | ||||| | |||| |||||||||||| | || || ||||| Sbjct 29058969 GACACAATTGATAATGTCAAGGCAAAAATACAGGACAAGGAAGGTATCCCCCCAGACCAA 29058910 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || ||||| || || |||| || | |||| | || || ||| Sbjct 29058909 CAGAGGTTGATCTTTGCTGGGAAGCAACTGGAGGATGGAAGGACTCTTGCTGACTACAAC 29058850 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGT 31401 ||||| ||||| || |||||||| || || Sbjct 29058849 ATTCAGAAAGAGTCTACTCTTCACCTTGT 29058821 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||| |||| ||||| || |||||| | || || ||| | ||| Sbjct 23083933 ATGCAGATATTCGTGAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23083874 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || ||| | || ||||||||||| | || || |||||| Sbjct 23083873 GACACCATTGACAACGTAAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 23083814 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || ||||| | || || | || | |||||| ||| Sbjct 23083813 CAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAAC 23083754 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| || || ||||| || ||| | || ||||| || Sbjct 23083753 ATCCAAAAGGAATCAACCCTCCATCTCGTGCTTCGCCTCAGGGGTGG 23083707 Score = 89.7 bits (98), Expect = 5e-13 Identities = 148/211 (70%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| |||||| |||| || || || || || | || |||||| || Sbjct 23083250 CATGCAAATCTTCGTGAAGACTTTGACGGGAAAGACCATAACTTTGGAGGTTGAAAGCTC 23083191 Query 31252 CGACAGTGTCGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACC 31310 |||| | || | || || || ||| || |||||||||||| | || || |||| Sbjct 23083190 TGACACCATTGATAATGTGAAGGCAAAGA-TACAGGACAAGGAAGGTATTCCACCAGACC 23083132 Query 31311 AGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATA 31370 ||||| | || || || || || || ||| ||||||| || || ||||||| Sbjct 23083131 AGCAGAGGCTTATTTTTGCAGGGAAGCAGCTGGAAGATGGGCGTACCCTGGCTGATTATA 23083072 Query 31371 ACATTCAAAAAGAATCGACTCTTCATCTGGT 31401 | || || || ||||| ||||| ||| |||| Sbjct 23083071 ATATCCAGAAGGAATCCACTCTGCATTTGGT 23083041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| || || || ||||| || || | || || || || Sbjct 25114684 ATGCAGATCTTCGTGAAGACGCTCACCGGGAAAACTATTACTCTGGAGGTGGAGAGTTCT 25114625 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || || || ||| |||||||| | || || || ||| Sbjct 25114624 GATACGATCGATAACGTGAAGGCGAAGATTCAGGATAAGGAAGGGATTCCACCGGATCAG 25114565 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||| || ||| | |||||| ||| | |||||| || Sbjct 25114564 CAGCGTCTTATCTTCGCTGGGAAGCAGCTCGAAGACGGACGCACTCTCGCCGATTACAAT 25114505 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACT 31410 ||||| || ||||| || ||||| || || ||||| || Sbjct 25114504 ATTCAGAAGGAATCCACGCTTCACCTTGTTCTTAGGCT 25114467 >seq10 Length=51566898 Score = 118 bits (130), Expect = 9e-22 Identities = 154/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || || || || ||||||||||| || | || || || | || Sbjct 4577016 ATGCAGATCTTCGTGAAAACCCTAACCGGCAAAACGATTACGCTAGAGGTAGAGTCCTCT 4576957 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| || || ||| |||||||| | || || || ||| Sbjct 4576956 GACACAATCGATAACGTGAAAGCGAAGATCCAGGATAAGGAAGGTATTCCACCGGATCAG 4576897 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || ||||| || || |||||||||||| | || | |||||| || Sbjct 4576896 CAACGTCTTATCTTCGCCGGAAAGCAGTTGGAAGACGGCAGAACCCTCGCCGATTACAAT 4576837 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 |||||||| |||||||| ||||||||||| ||| Sbjct 4576836 ATTCAAAAGGAATCGACGCTTCATCTGGTGCTT 4576804 Score = 98.7 bits (108), Expect = 9e-16 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || || || || |||||||| ||||| | || || || | || Sbjct 4577245 CATGCAAATCTTCGTCAAAACCCTTACTGGCAAAACAATCACGCTAGAGGTGGAGTCCTC 4577186 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| |||| | || ||| | || || |||||||| | || || || || Sbjct 4577185 CGACACAATCGATAACGTGAAAGCCAAGATTCAAGATAAGGAAGGGATTCCTCCGGATCA 4577126 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 ||| ||| | || ||||| || ||||| | |||||| | || | |||||| || Sbjct 4577125 GCAACGTTTGATCTTCGCCGGAAAACAACTCGAAGACGGCAGAACCCTCGCCGATTACAA 4577066 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 || || |||||||||||||| ||| |||| ||| Sbjct 4577065 TATCCAGAAAGAATCGACTCTGCATTTGGTGCTT 4577032 >seq7 Length=44630203 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || |||||||| || || || || |||||| | || || || || Sbjct 36855588 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 36855647 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || |||||| ||||| | || || ||||| Sbjct 36855648 GACACTATTGACAATGTCAAAGCCAAGATTCAGGACAAAGAAGGTATCCCACCAGACCAA 36855707 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || |||||||||||| | ||||| || || ||||| ||| Sbjct 36855708 CAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAAC 36855767 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||||||||| || || || |||| || | ||| | || |||| Sbjct 36855768 ATCCAAAAAGAATCTACCCTCCACTTGGTGCTCCGTCTGCGCGGTGGTA 36855816 >seq17 Length=41641078 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| || ||| |||| || || || |||||| | || || || | ||| Sbjct 3124244 ATGCAGATCTTCGTGAAAACTTTGACCGGTAAGACCATCACCCTTGAGGTGGAGTCCTCC 3124303 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | || ||||||||||| | || || |||||| Sbjct 3124304 GACACCATCGATAACGTGAAAGCTAAGATTCAAGACAAGGAAGGGATCCCACCTGACCAG 3124363 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || || || |||||| | || || | || | ||| || ||| Sbjct 3124364 CAGAGACTTATCTTTGCGGGTAAACAGCTTGAGGATGGTCGAACCCTTGCCGACTACAAC 3124423 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 || ||||| ||||| ||||| || || || ||| | || ||||| || Sbjct 3124424 ATCCAAAAGGAATCCACTCTCCACCTCGTGCTTCGCCTCAGGGGTGG 3124470 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || |||||||||||||| || || || ||| | || || ||| || Sbjct 3125156 ATGCAGATATTTGTGAAGACTCTGACAGGGAAGACCATTACCTTGGAGGTGGAAAGCTCT 3125215 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | | || | || ||| | || |||||||||||| | || || || ||| Sbjct 3125216 GATACTATTGACAATGTGAAAGCTAAGATTCAGGACAAGGAAGGTATCCCTCCAGATCAG 3125275 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | || || || ||||| || || |||||||| | || || ||||| || Sbjct 3125276 CAGAGGCTCATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCAGATTACAAT 3125335 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || ||||| ||| | ||||| || ||| Sbjct 3125336 ATTCAGAAGGAATCCACTTTGCATCTTGTCCTT 3125368 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445759763652720