Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 109 7e-19 seq14 82.4 1e-10 >seq3 Length=45779434 Score = 109 bits (120), Expect = 7e-19 Identities = 372/577 (64%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 33581 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAG 33640 ||| ||||| |||||||| || ||||| |||| || | |||||| || || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 33641 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATG-ATCCGGAAAAGA 33699 || ||||||| |||||||| || ||||||||||| | || || | |||||| |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 33700 AGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 33759 | ||||| || || ||| || || | || | ||| | | | | ||| | Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 40573074 Query 33760 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 33819 |||| | ||||| | ||| || || | | || || || || | |||||| || Sbjct 40573073 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 40573014 Query 33820 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 33879 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 40573013 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 40572954 Query 33880 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 33939 | || || || ||||| ||||| || || || ||||||||| | ||||| | | | Sbjct 40572953 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAAGCGCGGGCCTCCGGGAGTT 40572894 Query 33940 GCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAA 33999 | | |||| | || || | || | ||||| || || || || ||| || | Sbjct 40572893 GGATTTCTTTGGTGAAGCGGCCGGCGAGGTTTTCTAGGACGATGCCGTCGGAGGCGGCGA 40572834 Query 34000 AAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTTAGTTTATTCCAATCAT 34059 | || || | || || | || || | ||| | | || | ||| | Sbjct 40572833 AGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGCTGAGGGTGGCCCAGTGGC 40572774 Query 34060 TGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 34119 || || | || | ||||| || ||| | ||||| || || ||||| || || |||| Sbjct 40572773 GGAGGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCTTTCTTAT 40572714 Query 34120 ACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 34156 |||| | |||||| | | | |||||||||||||| || Sbjct 40572713 ACATTTCCCAGATTTGAGGGTATTGGATTGGGAACAT 40572677 >seq14 Length=49042192 Score = 82.4 bits (90), Expect = 1e-10 Identities = 66/80 (83%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 34077 TCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCA 34136 ||||| || ||||||||||| || || ||||| || || |||||||| | |||||| ||| Sbjct 17468413 TCCACCTCCTCCACTGTCCAGAAGGAGGCCTCCGCTTTCTTATACATTTCCCAGATTTCA 17468472 Query 34137 TGATATTGGATTGGGAAAAT 34156 | |||||||||||||| || Sbjct 17468473 GGGTATTGGATTGGGAATAT 17468492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629808223590480