Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq3 113 6e-20 seq6 98.7 1e-15 seq19 96.9 5e-15 seq4 93.3 6e-14 >seq3 Length=45779434 Score = 113 bits (124), Expect = 6e-20 Identities = 231/341 (68%), Gaps = 2/341 (1%) Strand=Plus/Minus Query 36157 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 36216 ||| ||||| |||||||| || ||||| |||| || | ||||||||| || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 36217 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGA 36275 || ||||||| |||||||| || ||||||||||| | |||||| | ||| || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 36276 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 36335 | ||||| || || || || || | || | ||| | | | | ||| | Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 40573074 Query 36336 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 36395 |||| | ||||| | ||| || || | | || || || || | ||| || || Sbjct 40573073 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 40573014 Query 36396 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 36455 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 40573013 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 40572954 Query 36456 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAA 36496 | || || || ||||| ||||| ||||| || ||||||||| Sbjct 40572953 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAA 40572913 >seq6 Length=51416163 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 66206 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 66265 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 12139145 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 12139204 Query 66266 AATAATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATT 66325 | ||| ||||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 12139205 GACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTC 12139264 Query 66326 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 66385 | ||| || | ||| ||||| || || ||| ||| | || || || || || Sbjct 12139265 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 12139324 Query 66386 ATCATAGATGCCCTCTATACTATCATCCATCATG 66419 ||||| || ||||||||||||||||| ||||| Sbjct 12139325 TTCATATATCCCCTCTATACTATCATCTTTCATG 12139358 >seq19 Length=50746504 Score = 96.9 bits (106), Expect = 5e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 36154 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 36213 || ||| ||||||||||||||||| || ||||| | | ||| | |||||| || || || Sbjct 32416637 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 32416578 Query 36214 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 36272 ||| || ||||| || || || ||||| ||||| || || | |||| || |||||| | Sbjct 32416577 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 32416519 Query 36273 AGAAAATTCCTT 36284 ||||||| |||| Sbjct 32416518 AGAAAATACCTT 32416507 >seq4 Length=52388848 Score = 93.3 bits (102), Expect = 6e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 66215 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 66274 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 48825097 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 48825038 Query 66275 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTTGCACGAATATTACTAATTGA 66334 |||||| || ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 48825037 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 48824978 Query 66335 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 66394 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 48824977 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 48824918 Query 66395 GCCCTCTATACTATCATCCATCAT 66418 ||||||||||||||||| |||| Sbjct 48824917 CCCCTCTATACTATCATCTTTCAT 48824894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658163001452440