Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq3 123 4e-23 seq6 93.3 6e-14 seq4 89.7 7e-13 seq19 87.8 3e-12 >seq3 Length=45779434 Score = 123 bits (136), Expect = 4e-23 Identities = 375/577 (65%), Gaps = 2/577 (0%) Strand=Plus/Minus Query 49959 ACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAG 50018 ||| ||||| |||||||| || ||||| |||| || ||||||||||| || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 50019 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ACCCAGAAAAGA 50077 || ||||||| |||||||| || ||||||||||| | |||||| | || || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 50078 AGATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCGCTGTCATGTA 50137 | ||||| || || || || || || || | ||| | | | | ||| | Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 40573074 Query 50138 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 50197 |||| | ||||| | ||| || || | | || || || || | |||||| || Sbjct 40573073 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 40573014 Query 50198 AGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTATACATTT 50257 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 40573013 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 40572954 Query 50258 CCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCT 50317 | || || || ||||| ||||| || || || ||||||||| | ||||| | | | Sbjct 40572953 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAAGCGCGGGCCTCCGGGAGTT 40572894 Query 50318 GCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGGCTGCAA 50377 | | |||| | || || | || | ||||| || || ||||| ||| || | Sbjct 40572893 GGATTTCTTTGGTGAAGCGGCCGGCGAGGTTTTCTAGGACGATGCCGTCGGAGGCGGCGA 40572834 Query 50378 AAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCCAATCAT 50437 | || || | || || | || || || ||| | | || | ||| | Sbjct 40572833 AGAAGGCGAGGACGTGGGTGATGAAGTGGCGCTCGCCGTCGCTGAGGGTGGCCCAGTGGC 40572774 Query 50438 TGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTAT 50497 || || | || | || || || ||| | ||||| || || ||||| || || |||| Sbjct 40572773 GGAGGTCCTGCGAGAGGTCCACCTCCTCCGCCGTCCAGAAGGAGGCCTCGGCTTTCTTAT 40572714 Query 50498 ACATATTCCAGATGTCATGATATTGGATTGGGAAAAT 50534 |||| | |||||| | | | |||||||||||||| || Sbjct 40572713 ACATTTCCCAGATTTGAGGGTATTGGATTGGGAACAT 40572677 >seq6 Length=51416163 Score = 93.3 bits (102), Expect = 6e-14 Identities = 147/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 80088 TTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAAT 80147 |||| ||| |||||||| | || | || || | ||| | || | |||||| || | Sbjct 12139148 TTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGGGAC 12139207 Query 80148 AATACCATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACT 80207 ||| ||||||||||| ||||| ||||| ||||| || || | |||||||| | | Sbjct 12139208 AATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATG 12139267 Query 80208 AATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATC 80267 ||| || | ||| ||||| || || ||| ||| | || || || || || || Sbjct 12139268 AATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTC 12139327 Query 80268 ATAGATGCCCTCTATGCTATCATCAATCATG 80298 ||| || |||||||| |||||||| ||||| Sbjct 12139328 ATATATCCCCTCTATACTATCATCTTTCATG 12139358 >seq4 Length=52388848 Score = 89.7 bits (98), Expect = 7e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 80094 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 80153 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 48825097 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 48825038 Query 80154 ATTGGATGTACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 80213 |||||| || ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 48825037 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 48824978 Query 80214 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 80273 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 48824977 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 48824918 Query 80274 GCCCTCTATGCTATCATCAATCAT 80297 |||||||| |||||||| |||| Sbjct 48824917 CCCCTCTATACTATCATCTTTCAT 48824894 >seq19 Length=50746504 Score = 87.8 bits (96), Expect = 3e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 49956 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 50015 || ||| |||||||||||||| || || ||||| | | ||| |||||||| || || || Sbjct 32416637 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 32416578 Query 50016 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAA 50074 ||| || ||||| || || || ||||| ||||| || || | |||| || ||||| | Sbjct 32416577 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 32416519 Query 50075 AGAAGATTCCTT 50086 |||| || |||| Sbjct 32416518 AGAAAATACCTT 32416507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718258106773240