Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_004002.1 Length=149955 Score E Sequences producing significant alignments: (Bits) Value seq7 109 5e-19 seq9 91.5 1e-13 seq3 84.2 2e-11 >seq7 Length=44630203 Score = 109 bits (120), Expect = 5e-19 Identities = 84/100 (84%), Gaps = 0/100 (0%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| |||||||||||||||||||||||||||||| || || || ||||| ||||| || Sbjct 43230729 ACAAGCAAAATCACAATGAAGGCCCTCATCTCTAGAGATTAGCTCATTTGAGAATGTCAA 43230670 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCA 13970 |||||||||||||||| ||||| | ||| ||||| ||| Sbjct 43230669 ACCTGGCATCAATCCTCTCTTTTTAAGCCAGAATATGGCA 43230630 >seq9 Length=50189283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 84/105 (80%), Gaps = 1/105 (1%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 ||| ||||||||||||| |||||| ||||||||| || || || ||| | ||||| || Sbjct 5487058 ACAAGCAAAATCACAATAAAGGCCTTCATCTCTAAAGATTAGCTCATTTAAGAATGTCAA 5486999 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAA 13975 |||||||||||||| ||||| | ||||||||| ||| |||| Sbjct 5486998 AACTGGCATCAATCCTTTCTTTTTAAGCCAAAATATGGCA-CAAA 5486955 >seq3 Length=45779434 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/133 (75%), Gaps = 2/133 (2%) Strand=Plus/Minus Query 13871 ACACGCAAAATCACAATGAAGGCCCTCATCTCTACTAATAAGTTCGTTTGAAAATGTTAA 13930 |||||| || || || ||||| |||||||||| || |||||||| || || || | Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 13931 TCCTGGCATCAATCCTCGtttttttAACCAAAATATTGCAGCAAATGAC-CCGGAAAAGA 13989 || ||||| || || || || || | ||||||||| || ||||| | ||||| |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCGC-GCAAAAGCTTCCGGAGAAGA 40573134 Query 13990 ATATTCCCTCAAC 14002 |||||||||| || Sbjct 40573133 ATATTCCCTCGAC 40573121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 479720858049400