Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq10 95.1 9e-15 seq13 89.7 4e-13 seq17 87.8 1e-12 >seq10 Length=51566898 Score = 95.1 bits (104), Expect = 9e-15 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||| ||| | || |||||||| | ||||||||||| Sbjct 4576790 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCG 4576849 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| ||||| || || ||||| || || | || || ||||| | || Sbjct 4576850 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 4576909 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| | |||| || | | | |||||| | ||| || Sbjct 4576910 ATACCTTCCTTATCCTGGATCTTCGCTTTCACGTTATCGATTGTGTCAGAGGACTCTACC 4576969 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| |||||||| |||||||| || || ||||| Sbjct 4576970 TCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 4577016 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || || | | ||||||||| | ||| || || || | ||||||||||| Sbjct 4577018 CCTCCGCGGAGACGAAGCACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCG 4577077 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | |||||| ||||| || ||||| || || ||||| | || Sbjct 4577078 AGGGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGA 4577137 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || ||| |||| || | | | ||||||| | ||| || Sbjct 4577138 ATCCCTTCCTTATCTTGAATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACC 4577197 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| || || || ||||| || || |||||||| Sbjct 4577198 TCTAGCGTGATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 4577244 >seq13 Length=45874162 Score = 89.7 bits (98), Expect = 4e-13 Identities = 136/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 || || || | ||||||||||| | || | |||| || | |||||| ||||| || Sbjct 25114950 TCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTGTTTACCGGCGAAG 25115009 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTG 43038 ||||| ||||| ||||| | || | ||||| || || ||| |||| || | Sbjct 25115010 ATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTCACGTTA 25115069 Query 43039 CCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACA 43098 | | ||||||| | |||||| |||| ||| || ||||| |||||||| ||||| || Sbjct 25115070 TCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGTTAGGGTTTTGACG 25115129 Query 43099 AAAATTTGCATTTT 43112 || || ||||| || Sbjct 25115130 AAGATCTGCATATT 25115143 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 ||||| || |||| | ||||| ||| | || || || || | ||||||||||| Sbjct 25114686 CCTCCGCGGAGTCGAAGCACCAGATGAAGCGTCGATTCTTTCTGAATATTGTAATCGGCG 25114745 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 | || | |||| || | ||||| ||||| || ||||| ||||| || || | || Sbjct 25114746 AGGGTTCTGCCGTCTTCGAGCTGTTTTCCGGCGAAGATCAAGCGCTGCTGGTCTGGTGGA 25114805 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | ||||| || || |||| |||| || | | | ||||| | |||||| Sbjct 25114806 ATGCCTTCCTTGTCCTGGATCTTAGCTTTCACGTTATCGATGGTGTCAGAGGACTCGACC 25114865 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 |||| ||| || ||||| |||||||| ||||| || || |||||||| Sbjct 25114866 TCTAGCGTAATCGTTTTACCGGTTAGGGTTTTGACGAAGATTTGCAT 25114912 >seq17 Length=41641078 Score = 87.8 bits (96), Expect = 1e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 42919 TCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAA 42978 |||||||| | || |||||| ||| ||||| || || |||||||| || || |||||| Sbjct 3129329 TCCTTTTGAATATCGTAATCTTCCAAGGTACGCTCATCTTCCAATTGCTTCCCAGCAAAA 3129270 Query 42979 ATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGA-TCAACTCTTTGACTCT 43037 || | | ||| ||||| | || | || || ||||| |||| || |||| || | Sbjct 3129269 ATAAGCCTCTGCTGATCCGGTGGAATGCCCTCCTTTTC-CTGAATCTTAGCTTTCACATT 3129211 Query 43038 GCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCAC 43097 ||| ||| || | | || || |||| ||||| || ||||| || | || || || Sbjct 3129210 TTCAATTGTATCAGAACCTTCAACCTCTAAAGTTATGGTCTTTCCCGTCAAGGTCTTGAC 3129151 Query 43098 AAAAATTTGCAT 43109 |||||||||||| Sbjct 3129150 AAAAATTTGCAT 3129139 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381364064301078