Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq3 118 1e-21 seq20 105 9e-18 seq6 89.7 7e-13 seq19 87.8 2e-12 seq16 87.8 2e-12 seq5 86.0 8e-12 seq4 84.2 3e-11 >seq3 Length=45779434 Score = 118 bits (130), Expect = 1e-21 Identities = 239/352 (68%), Gaps = 2/352 (1%) Strand=Plus/Minus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| |||||||| || |||||||||| || | ||||||||| || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCAAATG-ATCCAGAAAAGA 42182 || ||||||| |||||||| || ||||||||||| | |||||| | ||| || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242 | ||||| || || || || || | || | ||| | | | | ||| | Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 40573074 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 |||| | ||||| | ||| || || | | || || || || | |||||| || Sbjct 40573073 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 40573014 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 40573013 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 40572954 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 | || || || ||||| ||||| || || || ||||||||| | |||||| Sbjct 40572953 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAAGCGCGGGCCTC 40572902 >seq20 Length=47900577 Score = 105 bits (116), Expect = 9e-18 Identities = 237/352 (67%), Gaps = 3/352 (1%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| ||||| ||| |||| || |||||||||| || ||||| ||||| || ||||| Sbjct 3442305 ACACGCGAAGTCGTAGTGAAGCCCCTCATCTCGCGAGATGAATTCATTGGAGAAGGTGAG 3442364 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 || | ||||| || ||||| || ||||||||||| | |||| || ||| || |||| Sbjct 3442365 CCCTGACATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 3442423 Query 42183 AGATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCACTGTCATGTA 42242 | ||||||| || || || || || || | |||| | | | | | | | Sbjct 3442424 ATATTCCTTAGACGCAAGCGAATGCCATGAGGCGCTCTGCGAAGGATTCTGAGGCGTTGA 3442483 Query 42243 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAA 42302 || ||| | ||||| | ||| || || | | || || || || | ||||||| || Sbjct 3442484 TCTACTGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCACGAA 3442543 Query 42303 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTATACATTT 42362 | | | | ||||||| | ||||| || || || | || || || ||||||| Sbjct 3442544 ACAAACAATTTTTTT-TGTGGAGTCTTTGGTGTAGGTTTCTAAGAAGAGGCTGTACATTT 3442602 Query 42363 CTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTC 42414 | || || || ||||| ||||| || || || ||||||||| | |||||| Sbjct 3442603 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAAAGCGCGGGCCTC 3442654 >seq6 Length=51416163 Score = 89.7 bits (98), Expect = 7e-13 Identities = 148/214 (69%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 72168 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 72227 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 12139145 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 12139204 Query 72228 AATAATACCATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATT 72287 | ||| |||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 12139205 GACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTC 12139264 Query 72288 GCTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 72347 ||| || | ||| ||||| || || ||| ||| | || || || || || Sbjct 12139265 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 12139324 Query 72348 ATCATAGATGCCCTCTATACTATCATCCATCATG 72381 ||||| || ||||||||||||||||| ||||| Sbjct 12139325 TTCATATATCCCCTCTATACTATCATCTTTCATG 12139358 >seq19 Length=50746504 Score = 87.8 bits (96), Expect = 2e-12 Identities = 100/132 (76%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 42061 CAAACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGT 42120 || ||| |||||||||||||| || || || || | | ||| | |||||| || || || Sbjct 32416637 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 32416578 Query 42121 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAA 42179 ||| || ||||| || || || ||||| ||||| || |||| |||| || |||||| | Sbjct 32416577 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 32416519 Query 42180 AGAAGATTCCTT 42191 |||| || |||| Sbjct 32416518 AGAAAATACCTT 32416507 >seq16 Length=37887014 Score = 87.8 bits (96), Expect = 2e-12 Identities = 99/130 (76%), Gaps = 2/130 (2%) Strand=Plus/Plus Query 42064 ACATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAG 42123 ||| |||||||| || || ||||| ||||| | |||| ||| || || || ||||| Sbjct 5526489 ACAAGCGAAATCACAATGAAGACCTTCATCGCGTGATATTAGTTCATTTGAGAAAGTGAG 5526548 Query 42124 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGA 42182 ||||||||| || ||||| ||||| ||||| || | || |||| || ||| || |||| Sbjct 5526549 TCCGGGCATGAGTCCACGTTTTTTGAGCCAGAAGACAG-CGCAGAAGCTTCCGGAGAAGA 5526607 Query 42183 AGATTCCTTC 42192 |||| ||||| Sbjct 5526608 AGATACCTTC 5526617 >seq5 Length=42234498 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| || ||||| | || | ||| || | || | || | || |||||||| |||||| Sbjct 37337783 TCCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACC 37337842 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 ||| |||| ||||| || || ||| || ||||| |||||||||| ||| || Sbjct 37337843 ATTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACT 37337902 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| || | ||| || || || || ||||| || Sbjct 37337903 AACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATAT 37337962 Query 72357 GCCCTCTATACTATCATCCATCATG 72381 ||||||||||||||||| ||||| Sbjct 37337963 TCCCTCTATACTATCATCTTTCATG 37337987 >seq4 Length=52388848 Score = 84.2 bits (92), Expect = 3e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 72177 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 72236 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 48825097 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 48825038 Query 72237 ATTGGATGCACCATTGGTCCCGGAGATATAGCTTCCACTGGCACGAATATTGCTAATTGA 72296 |||||| | ||||| ||||| ||||| || || | |||||||| | ||| || Sbjct 48825037 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 48824978 Query 72297 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 72356 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 48824977 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 48824918 Query 72357 GCCCTCTATACTATCATCCATCAT 72380 ||||||||||||||||| |||| Sbjct 48824917 CCCCTCTATACTATCATCTTTCAT 48824894 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671129208415160