Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq13 116 4e-21 seq10 107 2e-18 seq17 91.5 1e-13 >seq13 Length=45874162 Score = 116 bits (128), Expect = 4e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||||||| | |||| || || ||||||||||| Sbjct 23088205 GTTGATTCCTTTTGGATGTTGTAATCGGCAAGGGTGCGACCATCCTCAAGTTGTTTACCC 23088264 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || || || || ||||| ||||| ||| || |||| Sbjct 23088265 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTT 23088324 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || |||| || | |||||||||||||| ||| Sbjct 23088325 ACGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTT 23088384 Query 143168 TTTACGAATATTTGCAT 143184 ||||||||||| ||||| Sbjct 23088385 TTTACGAATATCTGCAT 23088401 Score = 113 bits (124), Expect = 5e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || ||||| ||||| |||||||||||| | |||| || || ||||||||||| Sbjct 23083737 GTTGATTCCTTTTGGATGTTGTAATCGGCAAGGGTGCGACCATCCTCAAGTTGTTTACCC 23083796 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| |||| || | ||||| || || || || ||||| ||||| ||| || |||| Sbjct 23083797 GCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTAGCTTTT 23083856 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || ||| || |||| || | |||||||||||||| ||| Sbjct 23083857 ACGTTGTCAATGGTGTCGGAGGATTCCACCTCAAGGGTGATGGTCTTGCCGGTCAAAGTT 23083916 Query 143168 TTTACGAATATTTGCAT 143184 || |||||||| ||||| Sbjct 23083917 TTCACGAATATCTGCAT 23083933 Score = 105 bits (116), Expect = 7e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| ||||| | || || |||| || ||||| || || ||||||||||| Sbjct 23083478 GCCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGC 23083537 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || || || |||||||||||||| | ||||| | |||||||| ||||| Sbjct 23083538 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCTGGAGG 23083597 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 ||||| |||||||| || || || | | || | ||||||| || ||| || Sbjct 23083598 GATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCAC 23083657 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| |||||||| || || || || |||||||| Sbjct 23083658 CTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23083705 Score = 105 bits (116), Expect = 7e-18 Identities = 142/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || |||||||| || || ||||||||| | || || |||||||||||||||||| Sbjct 25114944 GTCGATTCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTGTTTACCG 25115003 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||||| ||| |||||||| || || |||||||| ||||| ||||| ||| Sbjct 25115004 GCGAAGATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTTAGCTTTC 25115063 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | || || || || | || | ||| || ||||| | ||| Sbjct 25115064 ACGTTATCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGTTAGGGTT 25115123 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 25115124 TTGACGAAGATCTGCATA 25115141 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| ||||| | || || |||| || ||||| || || ||||||||||| Sbjct 23087947 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 23088006 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || || || ||||||||||| ||| | ||||| | |||||||| || || Sbjct 23088007 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 23088066 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 ||||| |||||||| || || || | | || | ||||||| || ||| || Sbjct 23088067 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACC 23088126 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 |||| || | ||||| |||||||| || || || || |||||||| Sbjct 23088127 TCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23088173 >seq10 Length=51566898 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || ||||| | || |||||||| || || ||||||||| Sbjct 4577018 CCTCCGCGGAGACGAAGCACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCG 4577077 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||||||||||||| || || |||||| |||||||||||| ||||| Sbjct 4577078 AGGGTTCTGCCGTCTTCGAGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGA 4577137 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||| || ||| | | || | ||||| | || || || Sbjct 4577138 ATCCCTTCCTTATCTTGAATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACC 4577197 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | || ||||| || | ||||| ||||| |||||||| Sbjct 4577198 TCTAGCGTGATTGTTTTGCCAGTAAGGGTTTTGACGAAGATTTGCAT 4577244 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 ||||| || | ||| | || | ||||| || ||||| ||||| || ||||||||| Sbjct 4576790 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCG 4576849 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | || || || || |||| |||||||||||||| || || Sbjct 4576850 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 4576909 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || || || ||| | | || | ||||| | || ||||| Sbjct 4576910 ATACCTTCCTTATCCTGGATCTTCGCTTTCACGTTATCGATTGTGTCAGAGGACTCTACC 4576969 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||| |||||||| | ||||| ||||| || ||||| Sbjct 4576970 TCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCAT 4577016 >seq17 Length=41641078 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 142957 GCCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCT 143016 ||| |||| |||||| | ||| || || | ||||| || || || || |||||||| Sbjct 3124699 GCCACCTCTTAAACGAAGAACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATCAGC 3124640 Query 143017 CATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 143076 | || || || || ||||||||||||||| | |||| | |||||||| ||||| Sbjct 3124639 AAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGAGG 3124580 Query 143077 TATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTAC 143136 || || || ||||| || || || | | || | ||||||| || ||| || Sbjct 3124579 GATACCCTCCTTGTCCTGGATCTTGGCCTTGACATTATCAATGGTGTCCGAGGATTCGAC 3124520 Query 143137 TTCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | |||||||| ||||| || || || || |||||||| Sbjct 3124519 CTCGAGGGTGATGGTCTTGCCAGTCAAAGTCTTGACAAAGATTTGCAT 3124472 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507006851823120