Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_004690.1 Length=113220 Score E Sequences producing significant alignments: (Bits) Value seq13 102 6e-17 seq10 93.3 3e-14 seq7 93.3 3e-14 seq19 84.2 2e-11 >seq13 Length=45874162 Score = 102 bits (112), Expect = 6e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 15135 TGCCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGC 15194 ||||||||||||| | | || || ||||||||||| || || || ||||||||||| Sbjct 23083477 TGCCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAG 23083536 Query 15195 TTAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTG 15254 || |||| | || || | |||||| |||||| | |||| | || || || | Sbjct 23083537 CAAGGGTTCTTCCATCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCTGGAG 23083596 Query 15255 GAATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTA 15314 | || || |||||||| || ||| ||| ||| | || ||||| || ||| | Sbjct 23083597 GGATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCA 23083656 Query 15315 CATCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 | || | ||| ||||| || || |||| ||| || ||||| |||||||| Sbjct 23083657 CCTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23083705 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || ||||| ||||| || ||||| ||||||||||| || | | | || || Sbjct 29046255 ACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAGCAAGTGTACGTCCATCCTCA 29046314 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | || | |||||| ||||| ||| || ||||| ||||| | Sbjct 29046315 AGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 29046374 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | ||||||||||| | | || || || | ||| || || ||| Sbjct 29046375 ATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCTTA 29046434 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || || || |||||||| Sbjct 29046435 CCAGTGAGTGTCTTAACGAAGATTTGCAT 29046463 Score = 102 bits (112), Expect = 6e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || || || || ||||| || ||||| ||||||||||| || | | | || || Sbjct 29059961 ACCAAGTGTAGAGTGGACTCCTTTTGAATGTTGTAATCAGCAAGTGTACGTCCATCCTCA 29060020 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | || |||||||| | || | |||||| ||||| ||| || ||||| ||||| | Sbjct 29060021 AGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTGA 29060080 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| ||||||| | ||||||||||| | | || || || | ||| || || ||| Sbjct 29060081 ATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCTTA 29060140 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || || || ||||| |||||||| Sbjct 29060141 CCAGTGAGTGTCTTAACAAAGATTTGCAT 29060169 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| |||||||| || || || || |||||||| || || | | | ||||| |||| Sbjct 23082818 ATGCAGGGTGGATTCCTTCTGAATATTGTAATCCGCCAAGG-TACGACCATCTTCCAATT 23082876 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | || ||||| | || | | || || || |||||| || || ||||| ||| | Sbjct 23082877 GCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGGTGGAATACCCTCCTTGTCCTGAATCT 23082936 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 ||||| || ||| | || |||||||| |||| || || ||||| | ||| || ||| Sbjct 23082937 TTGCT-TTCACATTATCAATGGTATCAGAGCTTTCCACCTCCAAGGTTACGGTCTTCCCT 23082995 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || ||||| ||||||||| Sbjct 23082996 GTCAGAGTCTTCACAAATATTTGCATA 23083022 Score = 91.5 bits (100), Expect = 1e-13 Identities = 150/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 15152 AAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCT 15211 || || || || ||||| || || || || ||||| || || || |||| | ||| Sbjct 23087734 AACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCAAGGGTTCTTCCATCT 23087793 Query 15212 TCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCA 15271 || | ||||| || || | || | | |||||||| ||| || ||||| ||||| Sbjct 23087794 TCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGGATACCTTCCTTGTCC 23087853 Query 15272 CAAATTTT-GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGT 15330 ||| || ||| || ||| | ||||||||||| | | || || || ||||| ||||| Sbjct 23087854 TGAATCTTAGCT-TTCACATTGTCTATGGTATCTGAACTCTCCACCTCCAAGGTTATGGT 23087912 Query 15331 TTTACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 || || |||| |||||| || ||||| |||||| Sbjct 23087913 CTTTCCGGTCAAAGTTTTAACGAAAATCTGCATA 23087946 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 15137 CCACCTCTCAATCTTAAAACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTT 15196 ||||||||||| | | || || ||||||||||| || || || ||||||||||| Sbjct 23087947 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 23088006 Query 15197 AGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGA 15256 || |||| | || || | |||||| || || | |||| | || || || || Sbjct 23088007 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 23088066 Query 15257 ATTCCTTCTTTGTCACAAATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACA 15316 || || |||||||| || ||| ||| ||| | || ||||| || ||| || Sbjct 23088067 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTCCGAGGATTCCACC 23088126 Query 15317 TCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || | ||| ||||| || || |||| ||| || ||||| |||||||| Sbjct 23088127 TCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23088173 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||||||| || | | | || || | || Sbjct 29045805 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCGGCAAGGGTACGGCCATCCTCAAGCTGC 29045864 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| | ||||||||| ||| || || |||||||| ||| || Sbjct 29045865 TTTCCAGCAAAGATCAGTCTCTGTTGGTCGGGTGGGATACCCTCTTTGTCTTGAATCTTA 29045924 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | | || || || | |||||| || || || ||| Sbjct 29045925 GCCTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCAAGGGTAATTGTCTTTCCAGTC 29045984 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 29045985 AAGGTCTTGACAAAGATTTGCAT 29046007 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 || |||||||| ||||| || |||||||||||| || | | | || || | || Sbjct 29059511 TGGAGGGTGGACTCTTTCTGAATGTTGTAATCGGCAAGGGTACGGCCATCCTCAAGCTGC 29059570 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAATTTTG 15280 || ||||| | |||| | |||||||| ||| || || |||||||| ||| || Sbjct 29059571 TTTCCAGCAAAGATCAGCCTCTGTTGGTCTGGTGGGATACCCTCTTTGTCTTGAATCTTA 29059630 Query 15281 CTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGTC 15340 ||| ||| | || ||||| || | | || || || | |||||| || || || ||| Sbjct 29059631 GCCTTGACATTGTCAATGGTGTCAGAACTCTCCACCTCAAGGGTAATTGTCTTTCCAGTC 29059690 Query 15341 AGAGTTTTTACAAAAATTTGCAT 15363 | || || ||||| |||||||| Sbjct 29059691 AAGGTCTTGACAAAGATTTGCAT 29059713 >seq10 Length=51566898 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCT 15214 || ||||| || || || ||||| || || ||||||||| || |||| ||||||| Sbjct 4577036 ACCAAATGCAGAGTCGATTCTTTCTGGATATTGTAATCGGCGAGGGTTCTGCCGTCTTCG 4577095 Query 15215 AATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAA 15274 | |||||| || ||| | ||||||||||| || || ||||| ||||| || || | Sbjct 4577096 AGTTGTTTTCCGGCGAAGATCAAACGTTGCTGATCCGGAGGAATCCCTTCCTTATCTTGA 4577155 Query 15275 ATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTA 15334 || ||| || || | || || || ||| || || |||| || || ||||| Sbjct 4577156 ATCTTGGCTTTCACGTTATCGATTGTGTCGGAGGACTCCACCTCTAGCGTGATTGTTTTG 4577215 Query 15335 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || || ||||| || || |||||||| Sbjct 4577216 CCAGTAAGGGTTTTGACGAAGATTTGCAT 4577244 >seq7 Length=44630203 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213 || || || ||||| || |||||||| ||||||||||| || || ||| | ||||| Sbjct 36855796 ACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGG-TTCGGCCATCTTC 36855738 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||||||||| | || | | |||||||| ||| || ||||||||||| Sbjct 36855737 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCTTCTTTGTCCTG 36855678 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||| ||| || ||| | || || || || | || || || | ||| ||||| || Sbjct 36855677 AATCTTGGCTTTGACATTGTCAATAGTGTCAGAGCTCTCCACCTCAAGGGTGATGGTCTT 36855618 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15363 || || ||||| || ||||| |||||||| Sbjct 36855617 TCCAGTGAGAGTCTTGACAAAGATTTGCAT 36855588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 15154 AACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTC 15213 ||| || || || ||||| || ||||| ||||| ||||| || | | | || || Sbjct 36855113 AACCAAGTGGAGAGTGGACTCCTTTTGGATGTTATAATCAGCAAGGGTACGTCCATCCTC 36855054 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | || |||||||| | || | ||||| || || ||| || ||||| ||||| Sbjct 36855053 AAGCTGCTTGCCAGCAAAAATGAGCCGTTGCTGATCTGGTGGGATCCCTTCCTTGTCTTG 36854994 Query 15274 AATTTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTT 15333 ||||||| ||||||| | ||||||||||| | | || || || | || ||||| || Sbjct 36854993 AATTTTGGCCTTTACATTGTCTATGGTATCTGAACTCTCGACTTCGAGAGTGATGGTCTT 36854934 Query 15334 ACCTGTCAGAGTTTTTACAAAAATTTGCATATTTGAAA 15371 ||| || || || || || || |||||||| | | ||| Sbjct 36854933 ACCAGTGAGGGTCTTAACGAAGATTTGCATCTATAAAA 36854896 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/212 (71%), Gaps = 4/212 (2%) Strand=Plus/Minus Query 15155 ACTAAATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTC 15213 || || || ||||| || |||||||| ||||||||||| || || ||| | ||||| Sbjct 36856024 ACCAAGTGGAGGGTAGATTCTTTTTGGATGTTGTAATCAGCCAAGG-TTCGGCCATCTTC 36855966 Query 15214 TAATTGTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACA 15273 | ||||||||||| | || | | |||||||| ||| || || || ||||| Sbjct 36855965 AAGCTGTTTGCCAGCAAAAATGAGCCTCTGTTGGTCTGGTGGGATACCCTCCTTGTCTTG 36855906 Query 15274 AAT-TTTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTT 15332 || ||||| ||| ||| | || || || || | ||||| || || |||||||| | Sbjct 36855905 GATCTTTGC-CTTCACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAAAGTAATGGTCT 36855847 Query 15333 TACCTGTCAGAGTTTTTACAAAAATTTGCATA 15364 | || || || || || ||||| ||||||||| Sbjct 36855846 TCCCAGTAAGGGTCTTCACAAAGATTTGCATA 36855815 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 15161 TGAAGGGTGGAATCTTTTTGTATGTTGTAATCGCTTAGAATTCTCGCGTCTTCTAATTGT 15220 ||||||||||| || ||||| |||||||| || || | | | ||||| | || Sbjct 36856246 TGAAGGGTGGACTCCTTTTGGATGTTGTAGTCTGCCAGTGTACGTCCATCTTCAAGCTGC 36856187 Query 15221 TTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-TTT 15279 || ||||| | ||||| | ||| ||||| ||||| || || ||||| || ||| Sbjct 36856186 TTTCCAGCAAAAATCAACCTTTGCTGGTCTGGAGGAATACCCTCCTTGTCTTGGATCTTT 36856127 Query 15280 GCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCTGT 15339 || ||| ||| | || || || || | ||||| || || |||||||| || || || Sbjct 36856126 GC-CTTCACATTGTCAATTGTGTCTGAGCTCTCTACCTCCAAAGTAATGGTCTTCCCAGT 36856068 Query 15340 CAGAGTTTTTACAAAAATTTGCATA 15364 || || || ||||| ||||||||| Sbjct 36856067 AAGGGTCTTCACAAAGATTTGCATA 36856043 >seq19 Length=50746504 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/207 (71%), Gaps = 4/207 (2%) Strand=Plus/Plus Query 15160 ATGAAGGGTGGAATCTTTTTGTATGTTGTAATC-GCTTAGAATTCTCGCGTCTTCTAATT 15218 ||| | |||||| || || || || |||||||| || || | | | |||||||||| Sbjct 29366613 ATGCATGGTGGATTCCTTCTGAATATTGTAATCTGCCAAGG-TACGACCATCTTCTAATT 29366671 Query 15219 GTTTGCCAGCGTATATCAAACGTTGTTGGTCGTTTGGAATTCCTTCTTTGTCACAAAT-T 15277 | | ||||| | || | | ||| || || || || || || ||||| ||| | Sbjct 29366672 GCCTCCCAGCAAAAATGAGCCTTTGCTGATCTGGAGGGATACCCTCCTTGTCCTGAATCT 29366731 Query 15278 TTGCTCTTTACAATTTCTATGGTATCGCTATTTTCTACATCTAAGGTAATGGTTTTACCT 15337 | ||| || ||| | || || ||||| |||| || || ||||||||||| || ||| Sbjct 29366732 TAGCT-TTCACATTGTCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCT 29366790 Query 15338 GTCAGAGTTTTTACAAAAATTTGCATA 15364 |||||||| || ||||| ||||||||| Sbjct 29366791 GTCAGAGTCTTCACAAATATTTGCATA 29366817 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 362173942855731