Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_004778.3 Length=129593 Score E Sequences producing significant alignments: (Bits) Value seq13 102 7e-17 seq17 96.9 3e-15 seq9 82.4 6e-11 >seq13 Length=45874162 Score = 102 bits (112), Expect = 7e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || || ||||| ||||| |||||||| || Sbjct 23087947 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 23088006 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || |||||||| ||| |||| || ||||||||||| ||| Sbjct 23088007 AGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGG 23088066 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||||||||| || || || || | | | || || | ||| ||| Sbjct 23088067 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTC-CGAGGATTCCAC 23088125 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || ||||| |||||||| |||||||| Sbjct 23088126 CTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23088173 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || |||| ||| | | ||||| ||| | || || ||||| ||||| |||||||| || Sbjct 23083479 CCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCA 23083538 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | | ||||| || |||||||| || |||| || ||||||||||| || Sbjct 23083539 AGGGTTCTTCCATCCTCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCTGGAGGG 23083598 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGG-CTCCGT 18993 | |||||||||||| || || || || | | | || || | ||| ||| Sbjct 23083599 ATGCCCTCTTTGTCCTGGATCTTGGCCTTAACATTATCAATGGTGTC-CGAGGATTCCAC 23083657 Query 18994 TTCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || ||||| |||||||| |||||||| Sbjct 23083658 CTCAAGGGTGATGGTCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23083705 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 18838 GTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTG 18897 ||| | ||| || || || || ||||||||||| || | ||| || |||| || || || Sbjct 25114937 GTGGAGCGTCGATTCTTTCTGGATATTGTAATCGGCGAGAGTTCTGCCGTCTTCGAGTTG 25114996 Query 18898 TTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTT 18957 |||||| || | || | | |||||||||| || | ||| || ||||| ||||| Sbjct 25114997 TTTACCGGCGAAGATCAAACGCTGCTGATCCGGTGGAATGCCTTCCTTGTCTTGGATTTT 25115056 Query 18958 CTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGT 19017 ||| || | ||| || ||| | ||| || | ||||| |||||||| || Sbjct 25115057 AGCTTTCACGTTATCGATTGTGTCGGAGGACTCGACCTCTAGCGTAATCGTTTTACCGGT 25115116 Query 19018 TAAAGTTTTGACAAAAATTTGCATTTTAAA 19047 || |||||||| || || ||||| || || Sbjct 25115117 TAGGGTTTTGACGAAGATCTGCATATTGAA 25115146 >seq17 Length=41641078 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 18833 ACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCC 18892 |||| ||| || ||||||||||| |||||||||||||| || | ||| | | ||||| Sbjct 3124680 ACCAAGTGTAAGGTAGACTCCTTCTGAATATTGTAATCAGCAAGGGTTCTTCCATCCTCA 3124621 Query 18893 AGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCA 18952 || |||||||| ||| | || | ||||||||||| || | ||||| ||||| Sbjct 3124620 AGTTGTTTACCAGCAAATATCAACCTCTGCTGATCTGGAGGGATACCCTCCTTGTCCTGG 3124561 Query 18953 ATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCG-TTTCGACGGTAATGGTTTT 19011 || || || || | | | || || | ||| | || |||| ||| ||||| || Sbjct 3124560 ATCTTGGCCTTGACATTATCAATGGTGTC-CGAGGATTCGACCTCGAGGGTGATGGTCTT 3124502 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || || ||||| |||||||| |||||||| Sbjct 3124501 GCCAGTCAAAGTCTTGACAAAGATTTGCAT 3124472 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 18815 CCTCCTCGCAACCTTAACACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCC 18874 || || || | ||| || |||| ||||| ||||| ||||| || || || ||||| || Sbjct 3124926 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCA 3124867 Query 18875 ATTGTTTTGGCGTCCTCCAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGC 18934 | ||| | || || ||||||||||| ||| | ||||| |||||||| || ||| Sbjct 3124866 AGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGG 3124807 Query 18935 ACGCCCTCTTTGTCGGCAATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTT 18994 | ||||| || || ||| || ||| || | | | | ||||| | |||| Sbjct 3124806 ATACCCTCCTTATCTTGAATCTTGGCTTTCACATTGTCTATGGTATCTGAACTCTCCACC 3124747 Query 18995 TCGACGGTAATGGTTTTACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 || | ||| ||||| || || || ||||| ||||| ||||| ||||| Sbjct 3124746 TCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 3124700 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 18832 CACCATGTGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTC 18891 ||| | ||| | || || |||||||| || ||||| || || | ||| | ||||| Sbjct 3124453 CACGAGGTGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCGACCATCCTC 3124394 Query 18892 CAGCTGTTTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGC 18951 ||||||||||||||| | |||||||||||||| || || | || || ||||| Sbjct 3124393 AAGCTGTTTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTG 3124334 Query 18952 AATTTTCTGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTT 19011 ||| || ||| || | ||| || ||| | |||| || | ||| ||||| || Sbjct 3124333 AATCTTAGCTTTCACGTTATCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTT 3124274 Query 19012 ACCTGTTAAAGTTTTGACAAAAATTTGCAT 19041 ||| || |||||||| || || || ||||| Sbjct 3124273 ACCGGTCAAAGTTTTCACGAAGATCTGCAT 3124244 >seq9 Length=50189283 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 18839 TGCAACGTAGACTCCTTTTGAATATTGTAATCCGCCATTGTTTTGGCGTCCTCCAGCTGT 18898 ||||| | || ||||||||||||| |||||| |||| || | || |||| || Sbjct 19678098 TGCAAGATGGATTCCTTTTGAATATCGTAATCTGCCAAGGTACGACCATCTTCCAATTGC 19678039 Query 18899 TTACCCGCATAAATAAGTCTCTGCTGATCCACGGGCACGCCCTCTTTGTCGGCAATTTTC 18958 || || ||| |||| || |||| |||||| || | ||||| ||||| ||| || Sbjct 19678038 TTCCCAGCAAAAATGAGCCTCTACTGATCTGGAGGGATACCCTCCTTGTCCTGAATCTTA 19677979 Query 18959 TGTTTTACCTGGCCGACAGTATCGCCAGGCTCCGTTTCGACGGTAATGGTTTTACCTGTT 19018 ||| || | | | | |||||| | ||| || | ||||||||| || ||| || Sbjct 19677978 GCTTTCACATTGTCAATAGTATCACAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTATT 19677919 Query 19019 AAAGTTTTGACAAAAATTTGCAT 19041 | ||| || ||||| |||||||| Sbjct 19677918 AGAGTCTTCACAAATATTTGCAT 19677896 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 414566782346254