Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq13 86.0 4e-12 seq7 86.0 4e-12 seq17 84.2 2e-11 >seq13 Length=45874162 Score = 86.0 bits (94), Expect = 4e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 43912 CACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTC 43971 |||||| ||||| ||| ||| |||||||| || ||||| | | ||| |||| || Sbjct 29059960 CACCAAGTGTAGAGTGGACTCCTTTTGAATGTTGTAATCAGCAAGTGTACGTCCATCCTC 29060019 Query 43972 CAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGA 44031 | || || || ||||| || | ||||||||||| | || | ||||| || ||| Sbjct 29060020 AAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTTG 29060079 Query 44032 AATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTT 44091 ||| || || || || | | ||||||| |||||| || | || ||||| || Sbjct 29060080 AATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCTT 29060139 Query 44092 ACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 ||| || | ||||| ||||| |||||||| Sbjct 29060140 ACCAGTGAGTGTCTTAACAAAGATTTGCAT 29060169 >seq7 Length=44630203 Score = 86.0 bits (94), Expect = 4e-12 Identities = 113/157 (72%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 43965 CATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGGTACACCTTCTT 44024 |||| |||||||| || || ||||||||||||| |||||||| | || | ||| || | Sbjct 36856428 CATCCTCCAATTGCTTCCCAGCAAATATCAACCTCTGCTGGTCTGGTGGGATACCCTCCT 36856369 Query 44025 TATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCACATCGACCGTAA 44084 | || |||||| |||||| || | | || |||| || || || | |||| Sbjct 36856368 TGTCCTGGATTTTTGCTTTGACATTATCGATTGTGTCTGAGCTTTCAACTTCCAAGGTAA 36856309 Query 44085 TTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 | || || || || |||||||||||||| || ||||| Sbjct 36856308 TAGTCTTGCCTGTCAAAGTCTTCACAAAGATCTGCAT 36856272 >seq17 Length=41641078 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 |||||| | | || ||||||||||| || ||| ||| || || ||||||||||| Sbjct 3125155 ACCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGC 3125096 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | ||| |||| |||| || || || ||||| || | || |||||||| | || Sbjct 3125095 AAGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTGG 3125036 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | || ||||| || || ||| || || || | | ||||| | || || Sbjct 3125035 AATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAAC 3124976 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCATG 44122 || | || |||||||| ||||| |||||||| ||||| ||||||||| Sbjct 3124975 TTCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCATG 3124927 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 43931 TCTTTTTGAATATTATAATCGTTTAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAAT 43990 || || |||||||| ||||| || ||| |||| |||||||| || || ||||| Sbjct 3125346 TCCTTCTGAATATTGTAATCTGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAA 3125287 Query 43991 ATCAACCGTTGCTGGTCCTGAGGTACACCTTCTTTATCTGAAATTTTTTGTTTGACCATA 44050 || | || ||||| || |||| | |||||| || || ||| || ||| || | Sbjct 3125286 ATGAGCCTCTGCTGATCTGGAGGGATACCTTCCTTGTCCTGAATCTTAGCTTTCACATTG 3125227 Query 44051 GCAACAGTATCTGCCGGCTCCACATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACA 44110 ||| |||||| | ||||| || | ||||| || || || || | |||||||||| Sbjct 3125226 TCAATAGTATCAGAGCTTTCCACCTCCAAGGTAATGGTCTTCCCTGTCAGAGTCTTCACA 3125167 Query 44111 AATATTTGCAT 44121 ||||| ||||| Sbjct 3125166 AATATCTGCAT 3125156 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354772450292268