Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq1 105 6e-18 seq9 104 2e-17 seq13 100 2e-16 seq2 100 2e-16 seq20 96.9 3e-15 seq15 95.1 1e-14 seq10 87.8 2e-12 >seq1 Length=56831395 Score = 105 bits (116), Expect = 6e-18 Identities = 150/209 (72%), Gaps = 4/209 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 3099059 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 3099000 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | |||||||||| || || Sbjct 3098999 TTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 3098940 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | ||||||| ||| | || || |||||||| | Sbjct 3098939 GCCTTCACGTTGTCG--ATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCG 3098882 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTG 48730 | || |||||||| || |||||||||||| Sbjct 3098881 TTAGGGTTTTCACGAAGATCTGCATCGTG 3098853 >seq9 Length=50189283 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 || || ||| |||||| || |||||||| || || || || ||| ||||||||||||| Sbjct 1934939 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCGCCCGTCCTCCAGCTG 1934881 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | |||||||||||| ||| | | ||||||||| || || Sbjct 1934880 CTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTT 1934821 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | | || || || | |||||| ||| | ||||| || || || || Sbjct 1934820 CGCCTTCACATTGTCGATCGTGTCCGAAGACTCTACCTCTAGGGTTATCGTCTTCCCCGT 1934761 Query 48703 GAGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || |||||||| || |||||||| ||| || Sbjct 1934760 TAGGGTTTTCACGAATATCTGCATTGTGGCT 1934730 >seq13 Length=45874162 Score = 100 bits (110), Expect = 2e-16 Identities = 151/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || || || ||| ||||||||||||||||||||||| ||| ||| || | |||| Sbjct 29059960 CACCAAGTGTAGAGTGGACTCCTTTTGAATGTTGTAATCAG-CAAGTGTACGTCCATCCT 29060018 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| | ||| ||||| || || | | ||||||||| Sbjct 29060019 CAAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTT 29060078 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | |||| ||| | || || || | Sbjct 29060079 GAATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCT 29060138 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || ||||| || |||||| Sbjct 29060139 TACCAGTGAGTGTCTTAACAAAGATTTGCATC 29060170 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/212 (71%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCT 48575 ||| || ||||| ||| ||||||||| ||||||||||||| ||| ||| || | |||| Sbjct 29046254 CACCAAGTGAAGAGTGGACTCCTTTTGGATGTTGTAATCAG-CAAGTGTACGTCCATCCT 29046312 Query 48576 CCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCA 48635 | |||||||| || | |||| | ||| ||||| || || | | ||||||||| Sbjct 29046313 CAAGCTGCTTGCCAGCAAAAATGAGACGTTGCTGGTCTGGTGGGATCCCTTCCTTGTCTT 29046372 Query 48636 TAATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTT 48695 ||| || ||| | | |||||||||| | | |||| ||| | || || || | Sbjct 29046373 GAATCTTGGACTTTACATTATCTATGGTATCTGAACTCTCCACCTCAAGGGTGATTGTCT 29046432 Query 48696 TACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 |||| ||||| || || || || || |||||| Sbjct 29046433 TACCAGTGAGTGTCTTAACGAAGATTTGCATC 29046464 Score = 93.3 bits (102), Expect = 4e-14 Identities = 145/205 (71%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTG 48582 ||||| ||| ||||| ||||| |||||||| || | | || || |||| || ||||| Sbjct 25114482 TGAAGCGTGGATTCCTTCTGAATATTGTAATCGGCGAGAGTG-CGTCCGTCTTCGAGCTG 25114540 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | | |||||| ||| ||| || Sbjct 25114541 CTTCCCAGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCTTCCTTATCCTGAATCTT 25114600 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 | ||| | | || ||||| | | |||| ||| | || || ||||| ||||| Sbjct 25114601 CGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGTAATAGTTTTCCCGGT 25114660 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| || ||||||||| Sbjct 25114661 GAGCGTCTTCACGAAGATCTGCATC 25114685 >seq2 Length=48577505 Score = 100 bits (110), Expect = 2e-16 Identities = 150/211 (71%), Gaps = 4/211 (2%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 || || ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 3323553 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 3323494 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| ||| || | | |||||||||| || || Sbjct 3323493 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 3323434 Query 48644 TGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGG 48701 ||| | | | || ||||| || | ||||||| ||| | || || || ||||| | Sbjct 3323433 GCCTTCACGTTGTCG--ATGGTGTCAGAAGACTCCACCTCAAGGGTGATCGTCTTACCCG 3323376 Query 48702 TGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 | || |||||||| || |||||||||||||| Sbjct 3323375 TTAGGGTTTTCACGAAGATCTGCATCGTGTC 3323345 >seq20 Length=47900577 Score = 96.9 bits (106), Expect = 3e-15 Identities = 152/212 (72%), Gaps = 7/212 (3%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| || |||||||| ||||||||||| |||| ||| || || ||||||| || || Sbjct 38034148 TGAAGAGTACTCTCCTTCTGAATGTTGTAGTCAG-CAAGGGTACGGCCGTCCTCAAGTTG 38034090 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || |||| | ||| ||||| ||| || | | |||||||||| || || Sbjct 38034089 CTTTCCGGCGAAAATGAGACGTTGCTGGTCCGGGGGGATTCCTTCCTTGTCCTGGATCTT 38034030 Query 48643 CTGCTTGA--TAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCG 48700 ||||| | | || ||||| || | ||| ||| | || ||||| || ||| Sbjct 38034029 GGCCTTGACGTTGTCG--ATGGTGTCAGAGCTTTCCACCTCAAGGGTGATGGTCTTGCCG 38033972 Query 48701 GTGAGAGTTTTCACAAAAATCTGCATCGTGTC 48732 ||||| || || || || ||||||||| |||| Sbjct 38033971 GTGAGGGTCTTGACGAAGATCTGCATC-TGTC 38033941 >seq15 Length=51756343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 147/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| ||| |||||| || |||||||| || || | || |||||||||||||| Sbjct 10430776 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 10430717 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 |||||| || | || | |||||||| ||| ||| | | ||||||||| || ||| Sbjct 10430716 TTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTC 10430657 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||| | | | || || || | ||||| ||| | ||||| || || || || Sbjct 10430656 GCCTTCACATTGTCGATTGTGTCCGATGACTCTACCTCTAGGGTTATCGTCTTCCCCGTT 10430597 Query 48704 AGAGTTTTCACAAAAATCTGCATCGTGTCT 48733 || |||||||| || |||||||| ||| || Sbjct 10430596 AGGGTTTTCACGAATATCTGCATTGTGGCT 10430567 >seq10 Length=51566898 Score = 87.8 bits (96), Expect = 2e-12 Identities = 160/232 (69%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 48500 CCTCCGCGCAACCTTAACACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCC 48559 |||||||| | | | ||| | |||||| || ||||||||||| |||||||| || Sbjct 4576790 CCTCCGCGGAGACGAAGCACCAGATGAAGCGTCGATTCCTTTTGAATATTGTAATCGGCG 4576849 Query 48560 AATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGC 48619 | || |||| |||| |||||| ||| || | || | ||| ||||||||| || Sbjct 4576850 AGGGTTCTGCCGTCTTCCAACTGCTTTCCGGCGAAGATAAGACGTTGCTGATCCGGTGGA 4576909 Query 48620 ACACTTTCCTTGTCCATAATTTTCTGCTT----GATAGACGCTATGGTATCGGTAGACTC 48675 | || |||||| ||| || ||| |||| | || | || || || | ||||| Sbjct 4576910 ATACCTTCCTTATCCTGGATCTTC-GCTTTCACGTTA---TCGATTGTGTCAGAGGACTC 4576965 Query 48676 CGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCACAAAAATCTGCATC 48727 ||| | || || ||||| ||||| || |||||||| || ||||||||| Sbjct 4576966 TACCTCTAGCGTAATCGTTTTGCCGGTTAGGGTTTTCACGAAGATCTGCATC 4577017 Score = 84.2 bits (92), Expect = 2e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| ||||| || ||||| || || || || | ||||| ||||| Sbjct 4576586 TGAAGCGTGGACTCCTTCTGAATATTATAATCTGC-AAGCGTGCGTCCATCCTCAAGCTG 4576644 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| || || | || | ||||||||||||| || | | ||||| ||| ||| || Sbjct 4576645 CTTCCCTGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCCTCCTTATCCTGAATCTT 4576704 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||| | | || ||||| | | |||| ||| | || || ||||| ||||| Sbjct 4576705 TGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGTAATCGTTTTTCCGGT 4576764 Query 48703 GAGAGTTTTCACAAAAATCTGCATC 48727 ||| || ||||| || ||||||||| Sbjct 4576765 GAGCGTCTTCACGAAGATCTGCATC 4576789 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421245085407191