Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq10 114 7e-21 seq17 111 8e-20 seq13 111 8e-20 seq16 109 3e-19 seq12 109 3e-19 seq8 109 3e-19 seq20 107 1e-18 seq19 105 3e-18 seq1 105 3e-18 seq14 104 1e-17 seq3 104 1e-17 seq2 104 1e-17 seq4 102 4e-17 seq5 96.9 2e-15 seq15 93.3 2e-14 >seq10 Length=51566898 Score = 114 bits (126), Expect = 7e-21 Identities = 82/95 (86%), Gaps = 0/95 (0%) Strand=Plus/Plus Query 11435 AGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTAT 11494 ||||| || || || | ||| ||||||||| | | |||||||| ||||||||||||||| Sbjct 40969070 AGAATAAAAAATAAGTGAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTAT 40969129 Query 11495 TAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||| ||||||||||||||| |||| Sbjct 40969130 TAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 40969164 Score = 86.0 bits (94), Expect = 3e-12 Identities = 74/91 (81%), Gaps = 1/91 (1%) Strand=Plus/Plus Query 11435 AGAATTAATA-AAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTA 11493 ||||||||| |||||| | ||||||||| | | ||| ||||| ||| ||| ||||| Sbjct 31301112 AGAATTAATTTAAAAATTTTAATGGCCCATGCATGAATCAAACCTGTGACTTTCACGTTA 31301171 Query 11494 TTAGCACGACGCTCTRACCAACTGAGCTAAT 11524 ||||||||||||| | ||||| ||||||||| Sbjct 31301172 TTAGCACGACGCTTTAACCAATTGAGCTAAT 31301202 >seq17 Length=41641078 Score = 111 bits (122), Expect = 8e-20 Identities = 77/87 (89%), Gaps = 1/87 (1%) Strand=Plus/Minus Query 11444 AAAAAATCAAATT-GGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGA 11502 |||| | |||||| |||||||| | | |||||||| ||||||||||||||||||||||| Sbjct 7969630 AAAATAACAAATTTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGA 7969571 Query 11503 CGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||| ||||||||||||||| |||| Sbjct 7969570 CGCTCTAACCAACTGAGCTAATAGGCC 7969544 Score = 86.0 bits (94), Expect = 3e-12 Identities = 75/93 (81%), Gaps = 2/93 (2%) Strand=Plus/Plus Query 11437 AATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTA 11496 ||||||| ||||| || ||| ||| | ||| ||||||||| ||| ||| ||||||| Sbjct 22650809 AATTAATTTAAAATTAA--TGGTCCAAGCAAGAATCGAACCTATGACTTTCAAGTTATTA 22650866 Query 11497 GCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||| ||||| | ||||||||||||||| |||| Sbjct 22650867 GCACAACGCTTTAACCAACTGAGCTAATAGGCC 22650899 >seq13 Length=45874162 Score = 111 bits (122), Expect = 8e-20 Identities = 87/103 (84%), Gaps = 4/103 (4%) Strand=Plus/Minus Query 11429 AAATATAGAATTAATAAAAAATCAAATT--GGCCCATGAAAGGATCGAACCTTCGACCTT 11486 ||| ||| || |||||||| | | ||| |||||||| | | |||||||| ||||||| Sbjct 14993104 AAAAATACAA--AATAAAAAGTTATATTATGGCCCATGCAGGTCTCGAACCTGCGACCTT 14993047 Query 11487 CGCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||||| ||||||||||||||| |||| Sbjct 14993046 CGCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 14993004 Score = 105 bits (116), Expect = 3e-18 Identities = 77/89 (87%), Gaps = 2/89 (2%) Strand=Plus/Plus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 ||| |||||| || ||||||||| | | |||||||| ||||||||||||||||||||| Sbjct 33921682 AATGAAAAATAAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCAC 33921739 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| |||| |||||||||| |||| Sbjct 33921740 GACGCTCTAACCAGCTGAGCTAATAGGCC 33921768 Score = 100 bits (110), Expect = 1e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 11453 AATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACC 11512 |||||||||||| | | |||||||| |||||||||||||||||||||||| |||| ||| Sbjct 44215406 AATTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACACTCTAACC 44215465 Query 11513 AACTGAGCTAATGGGCC 11529 | |||||||||| |||| Sbjct 44215466 AGCTGAGCTAATAGGCC 44215482 >seq16 Length=37887014 Score = 109 bits (120), Expect = 3e-19 Identities = 76/86 (88%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 ||||||| | |||||||||| | | |||||||| |||||||||||||||||||||||| Sbjct 32019626 AAAAAATTA--TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGAC 32019683 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||||||||||||| |||| Sbjct 32019684 GCTCTAACCAACTGAGCTAATAGGCC 32019709 >seq12 Length=40091314 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 3430883 CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 3430942 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 3430943 CCAACTGAGCTAATAGGCC 3430961 >seq8 Length=47837022 Score = 109 bits (120), Expect = 3e-19 Identities = 71/79 (90%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 |||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| | Sbjct 15330119 CAAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 15330178 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 15330179 CCAACTGAGCTAATAGGCC 15330197 Score = 102 bits (112), Expect = 4e-17 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 9165636 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 9165577 Query 11515 CTGAGCTAATGGGCC 11529 ||||||||||||||| Sbjct 9165576 CTGAGCTAATGGGCC 9165562 >seq20 Length=47900577 Score = 107 bits (118), Expect = 1e-18 Identities = 70/78 (90%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 45067892 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 45067833 Query 11512 CAACTGAGCTAATGGGCC 11529 ||||||||||||| |||| Sbjct 45067832 CAACTGAGCTAATAGGCC 45067815 Score = 84.2 bits (92), Expect = 1e-11 Identities = 75/94 (80%), Gaps = 2/94 (2%) Strand=Plus/Plus Query 11436 GAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATT 11495 |||||||| ||||| || ||||||| | ||| || |||||| ||| ||| |||||| Sbjct 8841610 GAATTAATTTAAAATTAA--TGGCCCAAGCAAGAATTGAACCTGTGACTTTCAGGTTATT 8841667 Query 11496 AGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| ||||| | ||||||||||||| || ||| Sbjct 8841668 AGCACAACGCTTTAACCAACTGAGCTATTGAGCC 8841701 >seq19 Length=50746504 Score = 105 bits (116), Expect = 3e-18 Identities = 78/92 (85%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 44380013 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 44379954 Query 11516 TGAGCTAATGGGCCGTCGACGATTGTGATTTT 11547 ||||||||| |||| | || ||| ||||| Sbjct 44379953 TGAGCTAATAGGCCATATTTGAATGTTATTTT 44379922 Score = 104 bits (114), Expect = 1e-17 Identities = 85/102 (83%), Gaps = 4/102 (4%) Strand=Plus/Plus Query 11430 AATATAGAATTAATAAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTC 11487 || |||||| ||||||| | || |||||| ||| | | |||||||| |||||||| Sbjct 4444335 AAAATAGAA--AATAAAAGCTTTAAACTTGGCCTATGCAGGTCTCGAACCTGCGACCTTC 4444392 Query 11488 GCGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 ||||||||||||||||||||| ||||||||||||||| |||| Sbjct 4444393 GCGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 4444434 >seq1 Length=56831395 Score = 105 bits (116), Expect = 3e-18 Identities = 85/101 (84%), Gaps = 3/101 (3%) Strand=Plus/Plus Query 11429 AAATATAGAATTAATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCG 11488 |||||| ||| ||| ||| ||| ||||||||| | | |||||||| ||||||||| Sbjct 1520875 AAATATGTAAT-AATCTGAAAACAA--TGGCCCATGCAGGTCTCGAACCTGCGACCTTCG 1520931 Query 11489 CGTTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||||||||||||||| ||||||||||||||| |||| Sbjct 1520932 CGTTATTAGCACGACGCTCTAACCAACTGAGCTAATAGGCC 1520972 Score = 105 bits (116), Expect = 3e-18 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 44485522 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 44485463 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 44485462 CTGAGCTAATAGGCC 44485448 >seq14 Length=49042192 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 47493242 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 47493301 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 47493302 TGAGCTAATAGGCC 47493315 >seq3 Length=45779434 Score = 104 bits (114), Expect = 1e-17 Identities = 67/74 (91%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 5011706 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 5011765 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 5011766 TGAGCTAATAGGCC 5011779 Score = 91.5 bits (100), Expect = 8e-14 Identities = 73/89 (82%), Gaps = 0/89 (0%) Strand=Plus/Minus Query 11441 AATAAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCAC 11500 || ||||||| ||| ||||| ||| | | || ||||| | |||||| | |||||||||| Sbjct 39671881 AAAAAAAAATAAAAATGGCCTATGCAGGTTTCAAACCTACAACCTTCACATTATTAGCAC 39671822 Query 11501 GACGCTCTRACCAACTGAGCTAATGGGCC 11529 |||||||| | ||||||||||||| |||| Sbjct 39671821 GACGCTCTAATCAACTGAGCTAATAGGCC 39671793 >seq2 Length=48577505 Score = 104 bits (114), Expect = 1e-17 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 ||| |||||||||| | | || ||||| ||||||||||||||||||||||||||||| | Sbjct 4256215 CAACTTGGCCCATGCAGGTCTCAAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAA 4256156 Query 11511 CCAACTGAGCTAATGGGCC 11529 |||||||||||||| |||| Sbjct 4256155 CCAACTGAGCTAATAGGCC 4256137 >seq4 Length=52388848 Score = 102 bits (112), Expect = 4e-17 Identities = 69/78 (88%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 11452 AAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRAC 11511 ||| ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || Sbjct 43932153 AAAATGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAAC 43932212 Query 11512 CAACTGAGCTAATGGGCC 11529 || |||||||||| |||| Sbjct 43932213 CAGCTGAGCTAATAGGCC 43932230 Score = 96.9 bits (106), Expect = 2e-15 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||| ||||||||||||||||||||||||| |||||| Sbjct 41123215 TGGCCCATGCAGGTCTCGAACCTGCGATCTTCGCGTTATTAGCACGACGCTCTAACCAAC 41123274 Query 11516 TGAGCTAATGGG 11527 ||||||||| || Sbjct 41123275 TGAGCTAATAGG 41123286 >seq5 Length=42234498 Score = 96.9 bits (106), Expect = 2e-15 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| ||||||| ||||||||||||| ||||||| ||||| Sbjct 35288151 TTGGCCCATGCAGGTCTCGAACCTGCGACCTTGGCGTTATTAGCACCACGCTCTAACCAA 35288092 Query 11515 CTGAGCTAATGGGCC 11529 |||||||||| |||| Sbjct 35288091 CTGAGCTAATAGGCC 35288077 Score = 95.1 bits (104), Expect = 6e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 ||||||||| | | |||||||| ||||||||||||||||||||||||||||| || | | Sbjct 2230274 TGGCCCATGCAGGTCTCGAACCTGCGACCTTCGCGTTATTAGCACGACGCTCTAACTAGC 2230333 Query 11516 TGAGCTAATGGGCC 11529 ||||||||| |||| Sbjct 2230334 TGAGCTAATAGGCC 2230347 >seq15 Length=51756343 Score = 93.3 bits (102), Expect = 2e-14 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 |||||||||| | | |||||||| | || |||||||||||||||||||||||| ||||| Sbjct 1600360 TTGGCCCATGCAGGTCTCGAACCTGCAACTTTCGCGTTATTAGCACGACGCTCTAACCAA 1600301 Query 11515 CTGAGCTAATGGGCC 11529 |||| ||||| |||| Sbjct 1600300 CTGAACTAATAGGCC 1600286 Lambda K H 0.638 0.409 0.919 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261487404373516