Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq1190 493 2e-134 seq13 381 9e-101 seq14 289 5e-73 seq11 277 3e-69 seq9 125 1e-23 >seq1190 Length=152218 Score = 493 bits (546), Expect = 2e-134 Identities = 675/943 (72%), Gaps = 0/943 (0%) Strand=Plus/Minus Query 211610 TTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCG 211669 |||| |||||||||||| | ||||| || | | | | ||||| | ||||| Sbjct 1288 TTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACCGCAACTTCTGTATTTATTA 1229 Query 211670 TAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTT 211729 | || || || || || ||||| || ||||| || || || ||||| || || |||| | Sbjct 1228 TCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 1169 Query 211730 CATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCG 211789 | | | ||||| ||||| ||||| |||||||| || |||| |||| || || | Sbjct 1168 CTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAG 1109 Query 211790 GTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTG 211849 |||| ||||| |||||||| |||||||| ||| || ||||||| ||| | ||||| || | Sbjct 1108 GTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCG 1049 Query 211850 GTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGAC 211909 ||||||| | | | | | |||||| | | || | | |||||||| | Sbjct 1048 GTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTG 989 Query 211910 AGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCAC 211969 ||||||||||| | ||||| ||||||||||||||||| |||||| |||||||| | Sbjct 988 AGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTC 929 Query 211970 CTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAG 212029 |||| |||| ||| ||||| ||| | | || || | |||||||| || |||| Sbjct 928 CTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAG 869 Query 212030 ACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAAC 212089 | ||||||||| |||| || ||||| || ||||| || ||| | ||||| || || || | Sbjct 868 ATGGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGC 809 Query 212090 ATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCAT 212149 |||| || |||||||| ||||| || ||| |||||| || ||| | ||||| || | Sbjct 808 ATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCC 749 Query 212150 TATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTT 212209 ||||| ||||||||| ||||| | || || ||| | ||| | |||||||| | Sbjct 748 TATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAA 689 Query 212210 TAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTG 212269 || || || | ||||||| || || ||||| ||||| || ||||| || || | Sbjct 688 ATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAG 629 Query 212270 CTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAA 212329 |||| ||||| || || || || | |||||||| |||||| |||||||| | Sbjct 628 CTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTT 569 Query 212330 GTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTA 212389 |||||| |||||| | || | |||||||| | || | ||||| ||| || | |||| Sbjct 568 CTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTA 509 Query 212390 TCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCAT 212449 || |||| ||||| |||||| ||||||| ||||| ||||||||||| || |||||| Sbjct 508 TCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTC 449 Query 212450 CAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAG 212509 |||| || || ||| |||| |||| || ||||| |||| |||||||||||||||| Sbjct 448 AAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAG 389 Query 212510 TTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 | ||||| ||| | ||||| || || ||||| || || |||| Sbjct 388 TAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 346 >seq13 Length=45874162 Score = 381 bits (422), Expect = 9e-101 Identities = 618/891 (69%), Gaps = 20/891 (2%) Strand=Plus/Plus Query 211663 TTTATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTA 211722 |||||| | | || || || || |||| || ||||| || || || ||||| || || Sbjct 7358204 TTTATCATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 7358263 Query 211723 GCTGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 211782 |||| || | | ||||| ||||| ||||| |||||||| || |||| |||| Sbjct 7358264 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 7358323 Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842 || || ||||| ||||| |||||||| |||||||| ||| || ||||||| ||| | || Sbjct 7358324 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 7358383 Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902 || || |||||||| | | | || | |||||| | | || | | |||||| Sbjct 7358384 AACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 7358443 Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || | ||||||||||| | ||||| |||||||||||||| || |||||| Sbjct 7358444 GGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAATTGCTGTTGC---- 7358499 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||| ||| ||||| ||| | | || || | |||||||| Sbjct 7358500 --------------AGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGC 7358545 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || ||||| ||||||||| |||| || ||||| || | ||| || ||| | ||||| || Sbjct 7358546 TTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAG 7358605 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 || | ||||| || |||||||| ||||| || ||| | ||| || ||| | ||||| Sbjct 7358606 GCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGC 7358665 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTT-ATCCGTGAAAC 212201 || | ||||| ||||||||| | ||| |||| || | || || ||| | ||||| Sbjct 7358666 GGCTCCTTATTTAGTGCTATGCATGATTC-CTTGGTAACTTTTAGTTTGATCAGGGAAAC 7358724 Query 212202 CACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAA 212261 ||| | || || || | ||||||| || || ||||| || || || ||||| Sbjct 7358725 CACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTATAA 7358784 Query 212262 CATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA 212321 || || | ||| ||||| || || || || | |||||||| |||||| |||||||| Sbjct 7358785 TATTGTAGTTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 7358844 Query 212322 CAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTC 212381 | |||||| |||||| | || | |||||| | | || | ||||| ||| | Sbjct 7358845 TTCTCGTTCTTTACATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTACCGC 7358904 Query 212382 TATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGT 212441 | | |||||| ||| ||||| |||||| ||||||| ||||| ||||||||||| || || Sbjct 7358905 TTTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGT 7358964 Query 212442 TGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGG 212501 |||| |||| || || ||| |||| |||| || ||||| |||| |||||||| Sbjct 7358965 TGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGG 7359024 Query 212502 TATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGC 212552 ||||||||| ||||| ||| | ||||| || || ||||| || || |||| Sbjct 7359025 TATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGC 7359075 >seq14 Length=49042192 Score = 289 bits (320), Expect = 5e-73 Identities = 427/605 (71%), Gaps = 0/605 (0%) Strand=Plus/Plus Query 211756 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATCTGGGAA 211815 |||||||| || |||| |||| || || ||||| ||||| |||||||| |||||| Sbjct 41705868 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 41705927 Query 211816 GCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATCTTCCAC 211875 || ||| || ||||||| ||| | || || || | |||||| | | | | | ||| Sbjct 41705928 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 41705987 Query 211876 TTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGTTTAGGT 211935 ||| | | || | | |||||||| | ||||||||||| | ||||| ||| Sbjct 41705988 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 41706047 Query 211936 ATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCTGTATTC 211995 |||||||||| ||| |||||| |||||||| ||||| |||| ||| ||||| ||| Sbjct 41706048 ATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 41706107 Query 211996 CTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATATCAGGA 212055 || | || || | |||||||| || ||||| ||||||||| |||| || | ||| Sbjct 41706108 TTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTTAGGT 41706167 Query 212056 ACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCATTCCAT 212115 || ||||| || ||| | ||||| || || || ||||| || |||||||| ||||| || Sbjct 41706168 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 41706227 Query 212116 ATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGTTCTCTT 212175 ||| |||||| || ||| | ||||| || | ||||| || |||||| ||||| | Sbjct 41706228 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTCCTTG 41706287 Query 212176 GTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGTTACAAG 212235 || || |||| | ||| | |||||||| | || || || | ||||||| Sbjct 41706288 GTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 41706347 Query 212236 TTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGTAGACTT 212295 || || ||||| ||||| || ||||| || || ||||| ||||| || || || || | Sbjct 41706348 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 41706407 Query 212296 ATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCATCATGG 212355 |||||||| |||||| |||||||| | | |||||| |||||| | || | ||| Sbjct 41706408 ATCTTCCAATATGCAAGTTTCAACAATTGTCGTTCTTTACATTTCTTCTTAGCTGCTTGG 41706467 Query 212356 CCTGT 212360 || || Sbjct 41706468 CCAGT 41706472 >seq11 Length=34766867 Score = 277 bits (306), Expect = 3e-69 Identities = 408/578 (71%), Gaps = 0/578 (0%) Strand=Plus/Minus Query 211783 GCAATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTAC 211842 || || ||||| ||||| |||||||| |||||||| ||| || ||||||| ||| | || Sbjct 15042888 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 15042829 Query 211843 AATGGTGGTCCTTACCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACATG 211902 | ||||||||||| | | | | | |||||| | | || | | |||||| Sbjct 15042828 AGCGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 15042769 Query 211903 GGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTAT 211962 || | ||||||||||| | ||||| || |||||||||| ||| |||||| ||| Sbjct 15042768 GGGTGTGAGTGGGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCGATTGCTGTTGCATAT 15042709 Query 211963 TCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTCA 212022 ||||| ||||| |||| ||| ||||| ||| | | || || | |||||||| Sbjct 15042708 TCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGC 15042649 Query 212023 TTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCAA 212082 || ||||| ||||||||| || | || | ||| || ||||| || ||| | ||||| || Sbjct 15042648 TTTTCAGATGGTATGCCTCTAAGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAG 15042589 Query 212083 GCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGGT 212142 || || ||||| || |||||||| ||||| || ||| |||||| || ||| | ||||| Sbjct 15042588 GCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 15042529 Query 212143 GGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAACC 212202 || | ||||| ||||||||| ||||| | || || |||| | ||| | |||||| Sbjct 15042528 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACC 15042469 Query 212203 ACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAAC 212262 || | || || || | ||||||| || || ||||| ||||| || ||||| Sbjct 15042468 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAAT 15042409 Query 212263 ATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAAC 212322 || || ||||| ||||| || || || || | |||||||| |||||| |||||||| Sbjct 15042408 ATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAT 15042349 Query 212323 AGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGT 212360 | | |||||| |||||| | || | |||| ||| Sbjct 15042348 TGTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCTTGT 15042311 >seq9 Length=50189283 Score = 125 bits (138), Expect = 1e-23 Identities = 250/363 (69%), Gaps = 12/363 (3%) Strand=Plus/Minus Query 194584 AAACCTGAGTATGTATTTCTTGCTGCTGCTAAGGTAGGTGGTATAGGTGGTAACTCTACC 194643 |||||||| | ||| || | ||||| || || || ||||| || || ||| ||| Sbjct 49536019 AAACCTGAATTTGTCATTGTAGCTGCAGCCAAAGTTGGTGGCATCCATGCCAACAACACC 49535960 Query 194644 TATCCTGCCGATTTCAT--CTATGACAATCTGATGATTCAGACAAATGTTATTGATGCTG 194701 || |||||||||||||| | || ||| || || ||||| ||||| |||||| ||| Sbjct 49535959 TACCCTGCCGATTTCATTGCCAT--CAACCTCCAAATCCAGACCAATGTCATTGATTCTG 49535902 Query 194702 CATATCGTAATGGAGTTAAGAAACTATTGTTTCTAGGTTCATCTTGCATCTATCCTAAGT 194761 | ||||| || || | |||||||||||||||| | ||||| ||||| || || || || | Sbjct 49535901 CTTATCGCAACGGTGCTAAGAAACTATTGTTTTTGGGTTCCTCTTGTATTTACCCCAAAT 49535842 Query 194762 TTCCAAAGATACCTATTACAGAGGATCAGTTACTTGCTAGTCCTTTGGAAGAATCTAAT- 194820 | || ||| ||| | || ||| || ||| || | || || || | ||| Sbjct 49535841 ATGCACCCCAACCGATTCCGGAAGATGCTTTGCTTACTGGACCGTTAGAGCCCACCAATG 49535782 Query 194821 AGTGCTTATGCAATTGCAAAGATAGCAGGTATGAGGATGTGTCAAGCATATCG---TCAG 194877 | || ||||| ||||| ||||| || || || | ||||| || || || | |||| Sbjct 49535781 AATG-GTATGCCATTGCCAAGATTGCTGGGATCAAAATGTGCCAGGCTTACAGAATTCAG 49535723 Query 194878 CAGTATGGATTTAATGCAATATCATTAATGCCTACTAATCTATACGGACCTAATGATAAT 194937 || || | | ||||||| || |||||| || || |||| ||||| | || ||| Sbjct 49535722 CA-TAAG--TGGGATGCAATTTCTGGAATGCCCACCAACTTATATGGACCATACGACAAT 49535666 Query 194938 TTT 194940 ||| Sbjct 49535665 TTT 49535663 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807543177521960