Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq12 104 6e-17 seq6 104 6e-17 seq4 104 6e-17 seq5 100 7e-16 seq11 96.9 9e-15 seq8 96.9 9e-15 >seq12 Length=40091314 Score = 104 bits (114), Expect = 6e-17 Identities = 96/122 (79%), Gaps = 0/122 (0%) Strand=Plus/Plus Query 111703 AGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATTG 111762 |||| |||||| | ||| ||| ||||| |||||||||||||||||||| || || | Sbjct 2991605 AGTTCTATGTAGCTAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATGG 2991664 Query 111763 GTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCATT 111822 | || ||||| || |||||||||||| ||| ||||| || || ||| | ||||||||| Sbjct 2991665 GCCTGGGTGTCCCATTTAATATTGCATCTTATGCACTCCTGACATGCATGATCGCTCATG 2991724 Query 111823 TT 111824 || Sbjct 2991725 TT 2991726 >seq6 Length=51416163 Score = 104 bits (114), Expect = 6e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| ||| ||||| | | ||||| |||||||||||||||||||||||||| Sbjct 831178 CAGTTTTATGTAGCAC-ACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGATAT 831236 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || |||| |||||||||||| ||| || || | || ||| | || ||||| Sbjct 831237 GGGCCTGGGCATTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCA 831296 Query 111821 TTTT 111824 | || Sbjct 831297 TGTT 831300 >seq4 Length=52388848 Score = 104 bits (114), Expect = 6e-17 Identities = 99/124 (80%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 111702 CAGTTTTATGTA-CACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATAT 111760 |||||||||||| ||| ||||| | | ||||| ||||||||||||||||||||||| || Sbjct 847623 CAGTTTTATGTAGCAC-ACGGGGAGTTATCATGTCAAATGTATCAGCGATCTGCTGACAT 847681 Query 111761 TGGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCA 111820 || || || ||||| |||||||||||| ||| || || | || ||| | || ||||| Sbjct 847682 GGGCCTGGGCGTTCCATTTAATATTGCATCTTATGCCCTTTTGACATGCATGATTGCTCA 847741 Query 111821 TTTT 111824 | || Sbjct 847742 TGTT 847745 Score = 84.2 bits (92), Expect = 6e-11 Identities = 161/235 (69%), Gaps = 2/235 (1%) Strand=Plus/Plus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || ||||| || | || || | ||| | Sbjct 48824878 TTGCTTCCTTGTGTGTATGAAAGATGATAGTATAGAGGGGATATACGAAACTTTGAAGGA 48824937 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | || ||| || || ||||||||||| || || || | ||||||| Sbjct 48824938 GTGTGCTATCATCAGCAAATCAGCTGGAGGAATTGGTGTCTCCATTCATGACATTCGTGC 48824997 Query 363726 -ACAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTC 363784 |||| |||||| ||||| || ||| || || ||||| | ||||| ||| | | Sbjct 48824998 TACAG-GCAGTTATATTCGTGGGACAAATGGGACGTCCAATGGCATTGTTCCAATGTTGC 48825056 Query 363785 GTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 ||||||| | ||||||| | || || || ||||| ||||| ||| | ||||| Sbjct 48825057 GTGTGTTCAATGATACTGCCCGCTATGTTGATCAGGGGGGAGGCAAGAGGAAAGG 48825111 >seq5 Length=42234498 Score = 100 bits (110), Expect = 7e-16 Identities = 167/236 (71%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || ||| || ||||| || | |||||| | ||| | Sbjct 37338002 TTGCTTCCTTGTGTGCATGAAAGATGATAGTATAGAGGGAATATATGACACTTTGAAGGA 37337943 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG- 363724 ||||| | ||| ||| || || ||||||||||| | ||||| |||||| Sbjct 37337942 GTGTGCAGTCATTAGCAAATCAGCTGGAGGAATTGGTGTTAGTGTTCACAACATTCGTGC 37337883 Query 363725 CACAGAACAGTTACATTCGCGGCAC-AGGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 ||||| | |||||||| || ||||| | |||| | || ||||| | ||||| ||||| Sbjct 37337882 CACAGGA-AGTTACATCCGTGGCACAAATGGGACA-TCAAATGGTATTGTTCCAATGCTG 37337825 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| || ||||||| | || || || || || ||||| ||| | ||||| Sbjct 37337824 CGTGTGTTCAACGATACTGCTCGCTATGTTGATCAAGGGGGAGGCAAGAGGAAAGG 37337769 >seq11 Length=34766867 Score = 96.9 bits (106), Expect = 9e-15 Identities = 95/123 (77%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 111702 CAGTTTTATGTACACGACGGGATGCTTTCATGCCAAATGTATCAGCGATCTGCTGATATT 111761 ||||| |||||| | ||| ||| ||||| |||||||||||||||||||| || || Sbjct 8814258 CAGTTCTATGTAGCAAATGGGGAGCTATCATGTCAAATGTATCAGCGATCTGCCGACATG 8814317 Query 111762 GGTCTTGGTGTTCCGTTTAATATTGCAAGTTACGCACTACTTACTTGCTTAATCGCTCAT 111821 || || ||||| || |||||||||||| ||| || || || || ||| | || |||||| Sbjct 8814318 GGCCTGGGTGTCCCATTTAATATTGCATCTTATGCGCTCCTGACATGCATGATTGCTCAT 8814377 Query 111822 TTT 111824 || Sbjct 8814378 GTT 8814380 >seq8 Length=47837022 Score = 96.9 bits (106), Expect = 9e-15 Identities = 166/236 (70%), Gaps = 4/236 (2%) Strand=Plus/Minus Query 363606 TTGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 |||||| ||| | ||||| || || || ||||| || | |||||| | ||| | Sbjct 11047821 TTGCTTCCTTGTGTGCATGAAAGATTATAGTATAGAGGGAATATATGACACTTTGAAGGA 11047762 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTG- 363724 |||| | | ||| ||| ||||| ||||||||||| || ||||| ||| || Sbjct 11047761 GTGTGTTGTCATTAGCAAATCAGCAGGAGGAATTGGTGTTAGTATTCACAACATTCATGC 11047702 Query 363725 CACAGAACAGTTACATTCGCGGCACA-GGGGGATACTCGAATGGGCTGGTTCCCATGCTT 363783 ||||| |||||||||| | | |||| |||| | || ||||| | ||||| ||||| Sbjct 11047701 CACAG-GCAGTTACATTTGTGCCACACCTGGGACA-TCAAATGGTATTGTTCCAATGCTG 11047644 Query 363784 CGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGG 363839 |||||||| | ||||||| | || || || ||||| ||||| ||| | ||||| Sbjct 11047643 CGTGTGTTCAATGATACTGCTCGCTATGTTGATCAGGGGGGAGGTAAGAGGAAAGG 11047588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303333711231362