Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq10 118 9e-22 seq1 104 2e-17 seq17 98.7 8e-16 seq15 95.1 1e-14 seq2 95.1 1e-14 seq13 93.3 3e-14 seq7 89.7 4e-13 >seq10 Length=51566898 Score = 118 bits (130), Expect = 9e-22 Identities = 148/203 (73%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || ||||||||||||||||| |||||||||||||| | |||| || |||| || | ||| Sbjct 4577270 TGGAGCGTGGACTCCTTTTGGATGTTGTAGTCGGCGAGGGTTCTGCCGTCTTCGAGCTGT 4577329 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || | |||||||| ||| ||| | |||||| ||||| |||| Sbjct 4577330 TTTCCGGCGAAGATTAAACGCTGTTGATCCGGAGGAATGCCCTCCTTGTCTTGGATTTTG 4577389 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| || |||| |||| |||||| || || || || Sbjct 4577390 GCCTTCACGTTGTCGATGGTGTCAGAGGACTCCACCTCCAAGGTGATCGTCTTGCCAGTT 4577449 Query 16913 AGCGTTTTGACAAAAATCTGCAT 16935 || ||||| || || |||||||| Sbjct 4577450 AGGGTTTTCACGAAGATCTGCAT 4577472 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 16707 ACCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGG 16766 |||| || || || | || |||| ||||| || |||||||| || ||||||||||| | Sbjct 47989576 ACCCCCCACGAAGACGCAACACCAAGTGCAGAGTTGACTCCTTCTGGATGTTGTAGTCAG 47989635 Query 16767 CCATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAG 16826 | | ||| | | ||||| | |||||||| ||| ||||||||| ||| |||||| | Sbjct 47989636 CGAGGGTCCTTCCATCCTCTAGCTGTTTGCCAGCAAAAATAAGCCTCTGCTGGTCCGGTG 47989695 Query 16827 GCACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | | || || ||||| || | | |||||| | | | | |||||| | |||| Sbjct 47989696 GGATTCCTTCCTTGTCCTGGATCTTCGCCTTCACATTGTCAATGGTGTCGGAGCTCTCCA 47989755 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | ||| || || || || || || || ||||| || |||||||| Sbjct 47989756 CCTCGAGGGTAATAGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCAT 47989804 >seq1 Length=56831395 Score = 104 bits (114), Expect = 2e-17 Identities = 147/205 (72%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 3099059 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 3099000 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| ||| | ||| || ||||| || || Sbjct 3098999 TTCCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 3098940 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | |||| |||| ||||| ||||| || | Sbjct 3098939 GC--CTTCACGTTGTCGATGGTGTCCGAAGACTCCACCTCCAACGTGATCGTTTTACCCG 3098882 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||| || || |||||||| Sbjct 3098881 TTAGGGTTTTCACGAAGATCTGCAT 3098857 >seq17 Length=41641078 Score = 98.7 bits (108), Expect = 8e-16 Identities = 146/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||| |||||||| |||||||||||||| | |||| | ||||| | ||| Sbjct 3124446 TGGAGAGTGGATTCCTTTTGGATGTTGTAGTCGGCAAGGGTTCGACCATCCTCAAGCTGT 3124387 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAA--TTT 16850 || |||||| | ||||| | ||| ||||| || | || || ||||| || || Sbjct 3124386 TTACCCGCAAAGATAAGTCTCTGCTGGTCAGGTGGGATCCCTTCCTTGTCTTGAATCTTA 3124327 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 ||| ||||| | | | |||||| || |||| || | ||||||||| || |||| Sbjct 3124326 GCT--TTCACGTTATCGATGGTGTCGGAGGACTCCACCTCAAGGGTGATGGTCTTACCGG 3124269 Query 16911 TCAGCGTTTTGACAAAAATCTGCAT 16935 ||| ||||| || || |||||||| Sbjct 3124268 TCAAAGTTTTCACGAAGATCTGCAT 3124244 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || ||||||| |||| ||||| || || ||||| || ||||| || || || Sbjct 3124926 CCACCACGAAGCCTCAAAACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAATCTGCA 3124867 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | || || | ||||| || ||| | ||||||| ||| ||||| || Sbjct 3124866 AGGGTTCGTCCATCTTCAAGCTGTTTACCAGCAAAGATAAGCCTCTGCTGGTCTGGGGGG 3124807 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | ||||| || || ||| | ||| ||||| | | | | || || |||| Sbjct 3124806 ATACCCTCCTTATCTTGAATCTTGGCT--TTCACATTGTCTATGGTATCTGAACTCTCCA 3124749 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||||||||| ||||| |||| || ||||| ||||||||||| Sbjct 3124748 CCTCCAAGGTGATGGTCTTTCCCGTCAAAGTCTTGACGAAAATCTGCAT 3124700 >seq15 Length=51756343 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/207 (70%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || |||||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 10430776 TGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 10430717 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCGGCAATTTGC 16852 || || || | || || ||||| |||||| || | |||||| ||||| || | | Sbjct 10430716 TTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTC 10430657 Query 16853 TGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGGTC 16912 |||||| | | | | ||||| | ||| || | ||| || || || || || Sbjct 10430656 GCCTTCACATTGTCGATTGTGTCCGATGACTCTACCTCTAGGGTTATCGTCTTCCCCGTT 10430597 Query 16913 AGCGTTTTGACAAAAATCTGCATTTTG 16939 || ||||| || || ||||||||| || Sbjct 10430596 AGGGTTTTCACGAATATCTGCATTGTG 10430570 >seq2 Length=48577505 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/213 (70%), Gaps = 4/213 (2%) Strand=Plus/Minus Query 16733 TGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCCTCCAATTGT 16792 || || ||||||||||| || |||||||||||||| | ||| | ||||||||| || Sbjct 3323553 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGGCCGTCCTCCAGCTGC 3323494 Query 16793 TTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC--GGCAATTT 16850 || || || | || || ||||| |||||| ||| | ||| || ||||| || || Sbjct 3323493 TTTCCGGCGAAGATGAGGCGCTGCTGGTCCGGAGGGATGCCTTCCTTGTCCTGGATCTTG 3323434 Query 16851 GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTTTTTCCGG 16910 || |||||| | | | | ||||| | |||| || | |||||| || || || | Sbjct 3323433 GC--CTTCACGTTGTCGATGGTGTCAGAAGACTCCACCTCAAGGGTGATCGTCTTACCCG 3323376 Query 16911 TCAGCGTTTTGACAAAAATCTGCATTTTGTAGC 16943 | || ||||| || || |||||||| ||| || Sbjct 3323375 TTAGGGTTTTCACGAAGATCTGCATCGTGTCGC 3323343 >seq13 Length=45874162 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||| || || | |||| | | ||| Sbjct 23083494 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCC 23083553 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||| || || |||| |||| ||| || || ||| | |||||||||||| Sbjct 23083554 TCAAGTTGTTTACCAGCGAAAATCAGCCTCTGCTGATCTGGAGGGATGCCCTCTTTGTCC 23083613 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| || ||| || | |||||||| Sbjct 23083614 TGGATCTTGGC--CTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGG 23083671 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || |||||||| || ||||| Sbjct 23083672 TCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23083705 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || |||| || |||| ||||| || || ||||| || ||||| ||||| || Sbjct 23087719 CCACCACGAAGCCGCAACACCAAGTGCAGGGTAGATTCCTTCTGGATGTTATAGTCAGCA 23087778 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | ||||| || ||| | ||||||| ||||||||| || Sbjct 23087779 AGGGTTCTTCCATCTTCAAGCTGTTTCCCGGCAAAGATAAGCCTCTGTTGGTCTGGTGGG 23087838 Query 16829 ACGCCCTCTTTGTCGGCAATTT--GCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || || ||||| ||| | ||| ||||| | | | | || || |||| Sbjct 23087839 ATACCTTCCTTGTCCTGAATCTTAGCT--TTCACATTGTCTATGGTATCTGAACTCTCCA 23087896 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| ||| ||||| |||||||||| ||||| || ||||||||||| Sbjct 23087897 CCTCCAAGGTTATGGTCTTTCCGGTCAAAGTTTTAACGAAAATCTGCAT 23087945 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/214 (70%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| ||||| || |||||||| || || | |||| | | ||| Sbjct 23087962 AGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGCAAGGGTTCTTCCATCC 23088021 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTC- 16842 || | |||||| || ||| |||| |||| ||| || || || | |||||||||||| Sbjct 23088022 TCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGGGATGCCCTCTTTGTCC 23088081 Query 16843 -GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || || || ||| || | | | ||||| || ||| || | |||||||| Sbjct 23088082 TGGATCTTGGC--CTTAACATTATCAATGGTGTCCGAGGATTCCACCTCAAGGGTGATGG 23088139 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 | || ||||||| || |||||||| || ||||| Sbjct 23088140 TCTTCCCGGTCAAAGTCTTGACAAAGATTTGCAT 23088173 >seq7 Length=44630203 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || ||||| | ||||||| || || ||||||||||| || |||||||| || || Sbjct 36855358 CCACCACGTAGACGGAGTACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGCA 36855299 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | ||||| | || || || ||| | || |||| |||||| || ||| Sbjct 36855298 AGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATCAGCCTCTGTTGATCTGGAGGG 36855239 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||||||||| ||| | ||| || | | | | |||||| | ||| Sbjct 36855238 ATACCCTCTTTGTCCTGAATCTTAGCCTTAACGTTGTCAATGGTGTCGGAGCTCTCGACC 36855179 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 || | |||||| || ||||| |||| || || ||||| || ||||| Sbjct 36855178 TCAAGGGTGATTGTCTTTCCCGTCAAGGTCTTAACAAAGATTTGCAT 36855132 Score = 89.7 bits (98), Expect = 4e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 16708 CCCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGC 16767 ||| || || || | || |||| || || ||||||||||| || |||||||| || || Sbjct 36855587 CCCACCACGAAGGCGGAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCAGC 36855528 Query 16768 CATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGG 16827 | ||| | | ||||| | || || || ||| | || |||| |||||| || || Sbjct 36855527 AAGGGTACGGCCATCCTCAAGCTGCTTTCCAGCAAAGATGAGCCTCTGTTGATCTGGTGG 36855468 Query 16828 CACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||||| ||| | ||| || | | | | ||||| | |||| Sbjct 36855467 GATACCCTCTTTGTCCTGAATCTTAGCCTTAACATTGTCAATGGTGTCAGAGCTCTCCAC 36855408 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 || | |||||| || ||||||||||| || || ||||| || |||||| Sbjct 36855407 CTCAAGGGTGATTGTCTTTCCGGTCAGAGTCTTAACAAAGATTTGCATT 36855359 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405082120021090