Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq3 111 2e-19 seq20 98.7 1e-15 seq6 98.7 1e-15 seq19 96.9 4e-15 seq4 93.3 5e-14 seq5 86.0 8e-12 >seq3 Length=45779434 Score = 111 bits (122), Expect = 2e-19 Identities = 230/340 (68%), Gaps = 2/340 (1%) Strand=Plus/Minus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| |||||||| || ||||| |||| || | ||||||||| || ||||| Sbjct 40573252 ACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAG 40573193 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATG-ATCCAGAAAAGA 32778 || ||||||| |||||||| || ||||||||||| | |||||| | ||| || |||| Sbjct 40573192 CCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAGA 40573134 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 32838 | ||||| || || || || || | || | ||| | | | | ||| | Sbjct 40573133 ATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGAGGCATCGA 40573074 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 |||| | ||||| | ||| || || | | || || || || | ||| || || Sbjct 40573073 TCCAGCGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAA 40573014 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 | ||| |||||||| | ||||| | || || || | | || || ||||||| Sbjct 40573013 ACAGACGATTTTTTTCTGTGGAGTCTTTGATGTAGGTTTCTAAGAGGAGGCTGTACATTT 40572954 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 | || || || ||||| ||||| ||||| || |||||||| Sbjct 40572953 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAA 40572914 >seq20 Length=47900577 Score = 98.7 bits (108), Expect = 1e-15 Identities = 228/340 (67%), Gaps = 3/340 (1%) Strand=Plus/Plus Query 32660 ACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAG 32719 ||| ||||| ||| |||| || ||||| |||| || ||||| ||||| || ||||| Sbjct 3442305 ACACGCGAAGTCGTAGTGAAGCCCCTCATCTCGCGAGATGAATTCATTGGAGAAGGTGAG 3442364 Query 32720 TCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGA 32778 || | ||||| || ||||| || ||||||||||| | |||| || ||| || |||| Sbjct 3442365 CCCTGACATTAACCCGCGCTTCTTGAGCCAAAATATCG-CGCAGAAGCTTCCGGAGAAGA 3442423 Query 32779 AAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATGTA 32838 | ||||||| || || || || || || | |||| | | | | | | | Sbjct 3442424 ATATTCCTTAGACGCAAGCGAATGCCATGAGGCGCTCTGCGAAGGATTCTGAGGCGTTGA 3442483 Query 32839 TCCACTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAGCATTAA 32898 || ||| | ||||| | ||| || || | | || || || || | ||| ||| || Sbjct 3442484 TCTACTGGAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCACGAA 3442543 Query 32899 AGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTATACATTT 32958 | | | | ||||||| | ||||| || || || | || || || ||||||| Sbjct 3442544 ACAAACAATTTTTTT-TGTGGAGTCTTTGGTGTAGGTTTCTAAGAAGAGGCTGTACATTT 3442602 Query 32959 CCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAA 32998 | || || || ||||| ||||| ||||| || |||||||| Sbjct 3442603 CGGAGTGGATATTTTCGATGGCGATTTGGAAGCCGTAGAA 3442642 >seq6 Length=51416163 Score = 98.7 bits (108), Expect = 1e-15 Identities = 150/214 (70%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 63217 CCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGG 63276 || |||| ||| |||||||| | || | || || | ||| | || | |||||| || Sbjct 12139145 CCTTTTGCCTCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATCGG 12139204 Query 63277 AATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATT 63336 | ||| ||||||||||| ||||| ||||| ||||| || || | |||||||| | Sbjct 12139205 GACAATGCCATTGGATGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTC 12139264 Query 63337 ACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGT 63396 | ||| || | ||| ||||| || || ||| ||| | || || || || || Sbjct 12139265 ATGAATAGAGACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGT 12139324 Query 63397 ATCATAGATGCCCTCTATACTATCATCCATCATG 63430 ||||| || ||||||||||||||||| ||||| Sbjct 12139325 TTCATATATCCCCTCTATACTATCATCTTTCATG 12139358 >seq19 Length=50746504 Score = 96.9 bits (106), Expect = 4e-15 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| ||||||||||||||||| || ||||| | | ||| | |||||| || || || Sbjct 32416637 CAGACACGCGAAATCGCAGTGTAGCCCTTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGT 32416578 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAA 32775 ||| || ||||| || || || ||||| ||||| || || | |||| || |||||| | Sbjct 32416577 GAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGAAGATAG-CGCAGAAGCTTCCAGAGA 32416519 Query 32776 AGAAAATTCCTT 32787 ||||||| |||| Sbjct 32416518 AGAAAATACCTT 32416507 >seq4 Length=52388848 Score = 93.3 bits (102), Expect = 5e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| |||||||| | || | || || | ||| | || | ||||||||||| ||| || Sbjct 48825097 TCCCCCCTGATCAACATAGCGGGCAGTATCATTGAACACACGCAACATTGGAACAATGCC 48825038 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 |||||| || ||||| ||||| ||||| || || | |||||||| | | ||| || Sbjct 48825037 ATTGGACGTCCCATTTGTCCCACGAATATAACTGCCTGTAGCACGAATGTCATGAATGGA 48824978 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| ||| | || || || || || || || || Sbjct 48824977 GACACCAATTCCTCCAGCTGATTTGCTGATGATAGCACACTCCTTCAAAGTTTCGTATAT 48824918 Query 63406 GCCCTCTATACTATCATCCATCAT 63429 ||||||||||||||||| |||| Sbjct 48824917 CCCCTCTATACTATCATCTTTCAT 48824894 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 63467 GTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTG 63526 ||||| ||||| || | || ||||| || |||||||||||| || ||| | | | | Sbjct 48824723 GTTCCAGCATTGAAAAGTGTCGGAGATGCATGAGTAAACCATCGTTGAGACATCATGTGG 48824664 Query 63527 TACGTCTCAATAGCTGAGTCTATATC-CCATTGATGAATTCCTACTGCGACACGCATTAA 63585 || || | || || || ||||| || | ||| ||||| || || || || | ||| || Sbjct 48824663 TATGTTTTGATGGCAGAATCTATGTCATCCTTG-TGAATCCCAACAGCAACCCTCATCAA 48824605 Query 63586 CATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAA 63645 |||||| ||||| ||||| || | ||| | | ||||| | ||| || | || | Sbjct 48824604 CATGTGTTGAGGCCTTTCCACAACCTTCCCTTGAACCTTCAAGAGGTAAGACCTCTCAAG 48824545 Query 63646 AGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAAT 63693 ||||| || |||||||| | || |||||||| || || || || Sbjct 48824544 GGTTTTGAATCCAAAATAATCATAGTCAAAGTCTCTGTCATAGATTAT 48824497 >seq5 Length=42234498 Score = 86.0 bits (94), Expect = 8e-12 Identities = 142/205 (69%), Gaps = 0/205 (0%) Strand=Plus/Plus Query 63226 TCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACC 63285 ||| || ||||| | || | ||| || | || | || | || |||||||| |||||| Sbjct 37337783 TCCCCCTTGATCAACATAGCGAGCAGTATCGTTGAACACACGCAGCATTGGAACAATACC 37337842 Query 63286 ATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACTGGCACGAATATTACTAATTGA 63345 ||| ||||| ||||| || || ||| || ||||| |||||||||| || || Sbjct 37337843 ATTTGATGTCCCATTTGTGCCACGGATGTAACTTCCTGTGGCACGAATGTTGTGAACACT 37337902 Query 63346 TAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGAT 63405 | ||| ||||| || || ||| || | ||| || || || || ||||| || Sbjct 37337903 AACACCAATTCCTCCAGCTGATTTGCTAATGACTGCACACTCCTTCAAAGTGTCATATAT 37337962 Query 63406 GCCCTCTATACTATCATCCATCATG 63430 ||||||||||||||||| ||||| Sbjct 37337963 TCCCTCTATACTATCATCTTTCATG 37337987 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633622566803600