Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq19 100 6e-16 seq15 100 6e-16 seq10 100 6e-16 seq5 91.5 3e-13 seq1 89.7 1e-12 seq20 87.8 4e-12 seq18 87.8 4e-12 seq14 87.8 4e-12 seq11 87.8 4e-12 seq9 87.8 4e-12 seq8 87.8 4e-12 seq7 87.8 4e-12 seq3 87.8 4e-12 seq2 87.8 4e-12 seq17 86.0 1e-11 seq4 86.0 1e-11 >seq19 Length=50746504 Score = 100 bits (110), Expect = 6e-16 Identities = 267/403 (66%), Gaps = 4/403 (1%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| || || |||||||| | ||||| ||||| Sbjct 32416900 TCGAAGAAGTTGGTCTTTCCCTGCAGCGAAATCAGCTCCATCCAATCGAACGGGTTCTGA 32416841 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 |||||||| ||| ||||| || | | | || |||||||||||||| | Sbjct 32416840 ACATTGTACACCTTCCCGCACCCAAGCGCCCCCAGCAACCGATCTGCCACAAACTCAATG 32416781 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGA-CAAGGAATTGCCTCACAGAT 251741 || || | ||||| ||| |||||| || | || ||| || || | || || || | Sbjct 32416780 TATTGACTCATCAAATCACCGTTCATCCCCACCA-ACGCGCAGGGCAGCGCGTCGCACAC 32416722 Query 251742 GAATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAG 251801 || ||| || | | || || ||| |||||| || |||| | || | || Sbjct 32416721 AAACTCCCGCTCAATATCCACGGCGTCCCTCACAATCTCCCTCACGCGCTCCTCGGTGAG 32416662 Query 251802 CTTGTTCTCCAGCTTTGAGTACAGGAG-CTCGCCAAACTGTTGGTGCAGACCCTCGTCGC 251860 ||| | | |||| ||||| || || | ||| ||| | | || || || ||||||| Sbjct 32416661 CTTCTGCCTCAGCAGAGAGTAGAGCAGACACGCGAAATCGCAG-TGTAGCCCTTCGTCGC 32416603 Query 251861 GACTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGA 251920 || |||| ||||| || | | || || ||||| | || || || ||||||||| Sbjct 32416602 GAGAAATGAGTTCGTTTGAGAAAGTGAGCCCCGGCATGAGTCCTCGTTTTTTGAGCCAGA 32416543 Query 251921 AGATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACA 251963 |||| ||||| ||| ||||||||| | | ||| | ||||| Sbjct 32416542 AGATAGCGCAGAAGCTTCCAGAGAAGAAAATACCTTTAACACA 32416500 >seq15 Length=51756343 Score = 100 bits (110), Expect = 6e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| |||||||||||||| || | ||||| || || | || Sbjct 51498683 TCCATTCCCTCTATGGTCGATGGCCTCAAGCCTGGTCAAAGGAAGATTCTTTTCTGCTCA 51498624 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||| || |||||||||| || | |||||| |||||| || || || Sbjct 51498623 TTTAAGAAGAAGTTGTCCAAAGAAATTAAAGTAGGCCAGTTTATTGGTTACGTGTCTGAG 51498564 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 |||| ||||| || |||||||| ||||| || | ||| | ||||||||| Sbjct 51498563 CACTCTGCTTACCACCATGGTGAGCAAAGTCTAGCTAGTACAATTATTAATATGGCACAG 51498504 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || | |||||| || |||||||| || | || || ||||| || |||||| ||||| Sbjct 51498503 GATTTTGTGGGTAGCAACAACATCAATCTTCTTAAGCCAAACGGGCAATTTGGTACTCGT 51498444 >seq10 Length=51566898 Score = 100 bits (110), Expect = 6e-16 Identities = 166/240 (69%), Gaps = 0/240 (0%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || |||||| |||| |||||||||||||| || | ||||| || || | || Sbjct 11992278 TCCATTCCCTCTATGGTCGATGGCCTCAAGCCTGGCCAAAGGAAGATTCTTTTCTGCTCA 11992219 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 || ||| ||| || | ||||||| || || | |||||| |||||| || || || Sbjct 11992218 TTTAAGAAGAAGTTGTTCAAAGAAATAAAAGTAGGCCAGTTTATTGGTTACGTTTCTGAG 11992159 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 |||| ||||| || |||||||| ||||| | | ||| | ||||||||| Sbjct 11992158 CACTCTGCGTACCACCATGGTGAGCAAAGTCTAGCTAGCACAATTATTAATATGGCACAG 11992099 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGTTCTCGT 218808 || | |||||| || |||||||| || | || || |||||||| |||||| ||||| Sbjct 11992098 GATTTTGTGGGTAGCAACAACATCAATCTTCTTAAACCAAACGGTCAATTTGGTACTCGT 11992039 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 50855243 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 50855184 Query 142564 CCCAC 142568 ||||| Sbjct 50855183 CCCAC 50855179 >seq5 Length=42234498 Score = 91.5 bits (100), Expect = 3e-13 Identities = 61/68 (90%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 142501 ATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCG 142560 |||||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||| Sbjct 31894894 ATAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCG 31894953 Query 142561 AGCCCCAC 142568 |||||||| Sbjct 31894954 AGCCCCAC 31894961 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 7319699 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 7319758 Query 142563 CCCCAC 142568 |||||| Sbjct 7319759 CCCCAC 7319764 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 4809248 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4809189 Query 142564 CCCAC 142568 ||||| Sbjct 4809188 CCCAC 4809184 >seq1 Length=56831395 Score = 89.7 bits (98), Expect = 1e-12 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 142502 TAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGA 142561 ||||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||| Sbjct 54394639 TAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGA 54394580 Query 142562 GCCCCAC 142568 ||||||| Sbjct 54394579 GCCCCAC 54394573 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 47617290 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 47617231 Query 142563 CCCCAC 142568 |||||| Sbjct 47617230 CCCCAC 47617225 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 53455184 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 53455125 Query 142564 CCCAC 142568 ||||| Sbjct 53455124 CCCAC 53455120 >seq20 Length=47900577 Score = 87.8 bits (96), Expect = 4e-12 Identities = 67/78 (86%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 34208886 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 34208945 Query 142564 CCCACATCGGGCAGAAGT 142581 ||||| |||| ||||| Sbjct 34208946 CCCACGGTGGGC-GAAGT 34208962 >seq18 Length=58018742 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 50760184 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 50760125 Query 142563 CCCCAC 142568 |||||| Sbjct 50760124 CCCCAC 50760119 >seq14 Length=49042192 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4557005 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4557064 Query 142563 CCCCAC 142568 |||||| Sbjct 4557065 CCCCAC 4557070 >seq11 Length=34766867 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2122311 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2122370 Query 142563 CCCCAC 142568 |||||| Sbjct 2122371 CCCCAC 2122376 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 3006522 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 3006581 Query 142563 CCCCAC 142568 |||||| Sbjct 3006582 CCCCAC 3006587 >seq9 Length=50189283 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 40302165 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 40302224 Query 142563 CCCCAC 142568 |||||| Sbjct 40302225 CCCCAC 40302230 >seq8 Length=47837022 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 16345973 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 16346032 Query 142563 CCCCAC 142568 |||||| Sbjct 16346033 CCCCAC 16346038 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 39581660 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 39581601 Query 142563 CCCCAC 142568 |||||| Sbjct 39581600 CCCCAC 39581595 >seq7 Length=44630203 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1304508 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1304567 Query 142563 CCCCAC 142568 |||||| Sbjct 1304568 CCCCAC 1304573 >seq3 Length=45779434 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 2544118 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 2544177 Query 142563 CCCCAC 142568 |||||| Sbjct 2544178 CCCCAC 2544183 >seq2 Length=48577505 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 44900401 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 44900460 Query 142563 CCCCAC 142568 |||||| Sbjct 44900461 CCCCAC 44900466 >seq17 Length=41641078 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 5718973 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 5719032 Query 142564 CCCAC 142568 ||||| Sbjct 5719033 CCCAC 5719037 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 12745363 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 12745422 Query 142564 CCCAC 142568 ||||| Sbjct 12745423 CCCAC 12745427 >seq4 Length=52388848 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 9545292 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 9545233 Query 142564 CCCAC 142568 ||||| Sbjct 9545232 CCCAC 9545228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027821115531631