Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 168 1e-36 seq19 140 6e-28 seq16 125 1e-23 >seq3 Length=45779434 Score = 168 bits (186), Expect = 1e-36 Identities = 429/647 (66%), Gaps = 12/647 (2%) Strand=Plus/Plus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||| ||||| || || |||| |||||| || |||||| | ||||| Sbjct 40572701 ATCTGGGAAATGTATAAGAAAGCCGAGGCCTCCTTCTGGACGGCGGAGGAGGTGGACCTC 40572760 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAA--CGAAAAGTTTTTCCTCAAA 42416 | ||||| | ||| ||||| ||| || | || ||| ||| ||| Sbjct 40572761 TCGCAGGACCTCCGCCA-CTGGGC--CACCCTCAGCGACGGCGAGCGCCACTTCATCACC 40572817 Query 42417 AACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGG 42476 || | || ||||||||||||||||| |||||||| ||| || ||||| ||| | | Sbjct 40572818 CACGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTAGAAAACCTCGCCGGCCGC 40572877 Query 42477 TTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATA 42536 |||| ||||| | || | ||||| ||| |||||||||||||| || ||||| Sbjct 40572878 TTCACCAAAGAAATCCAACTCCCGGAGGCCCGCGCTTTCTACGGCTTCCAAATCGCCATC 40572937 Query 42537 GAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTC 42596 || || | ||||| || ||||| | || | | || |||||| || || Sbjct 40572938 GAAAATATCCACTCCGAAATGTACAGCCTCCTCTTAGAAACCTACATCAAAGACTCCACA 40572997 Query 42597 GAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGAC 42656 || || | ||||| ||||| | || || || ||||||| || || || | Sbjct 40572998 GAAAAAAATCGTCTGTTTCGCGCCATAAACACCATCCCATGCATCACCAAAAAAGCCCAG 40573057 Query 42657 TGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTT 42716 ||||| ||| ||||||||| | || | | | |||| ||| | || || || || Sbjct 40573058 TGGGCCCTCCGCTGGATCGA---TGCCTCAGAATCCTTCGCGGAGCGCCTCGTGGCATTC 40573114 Query 42717 ACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAG 42776 | ||||||||| || |||||||| || ||| | | || || ||||||||| || Sbjct 40573115 GCTTGCGTCGAGGGAATATTCTTCTCCGGAAGCTTTTGCGCGATATTTTGGCTCAAGAAG 40573174 Query 42777 AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTG 42836 | || ||||| || ||||||||||| |||||||||||| | || |||||||| Sbjct 40573175 CGTGGGTTAATGCCGGGGCTCACCTTCTCCAACGAACTCATCTCGCGAGATGAGGGGCTT 40573234 Query 42837 CATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAG 42896 || | ||||| || || ||| ||| |||| | |||||| | |||| ||||| Sbjct 40573235 CACTGCGACTTCGCGTGTCTCTTGTACTCG---CTTCTCAGGAAGAAGCTTAGTGAGGAG 40573291 Query 42897 CGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTT 42943 || || ||| || | || || |||||||| |||| |||||| Sbjct 40573292 CGCGTGAGGGAGATTGTGCGTGACGCGGTGGAGATTGAGAGGGAGTT 40573338 >seq19 Length=50746504 Score = 140 bits (154), Expect = 6e-28 Identities = 288/425 (68%), Gaps = 5/425 (1%) Strand=Plus/Plus Query 42292 ACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGA 42351 ||| | | |||||| ||||||||||| || | ||| |||||| || |||||| Sbjct 32415483 ACCCGCAAATCTGGGAAATGTACAAGAAAGCCGAAGCCTCGTTCTGGACGGCGGAGGAGG 32415542 Query 42352 TTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTC 42410 | ||||| || ||||| | ||| |||||| || || | || ||| ||| Sbjct 32415543 TGGACCTCTCCCAGGACCTCCGCCA-CTGGGACTCCCTCACCGACGGCGAGCGCCACTTC 32415601 Query 42411 CTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCC 42470 ||| || | || ||||||||||||||||| || ||||| ||| |||||||| ||| Sbjct 32415602 GTCACCCACGTCCTCGCCTTCTTCGCCGCCTCCGATGGCATCGTCCTCGAGAACCTCGCC 32415661 Query 42471 ACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATA 42530 | |||| || ||| | ||| | ||||| || |||||||||||||||||| Sbjct 32415662 GGGCGCTTCACAAAGGAGATCCAGCTCCCCGAGGCCCGGGCCTTCTACGGCTTCCAGATC 32415721 Query 42531 GCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGAT 42590 ||||| |||||| | ||||| ||| ||||| | || ||| | || |||||| ||| Sbjct 32415722 GCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATCAAGGAC 32415781 Query 42591 CCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAG 42650 ||| | || ||| || ||| ||||| || || || |||||| || ||||| Sbjct 32415782 TCCGACCAGAAGAACCACCTCTTCCGTGCCATCGACACCATCCCCTGCGTCGCTAAGAAA 32415841 Query 42651 GCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTA 42710 || | ||||| || ||||||||| | || || | |||| |||| | || || Sbjct 32415842 GCCCAGTGGGCCCTTCGCTGGATCGA---TTCCTCCGACTCCTTCGCCGAGCGTCTCGTT 32415898 Query 42711 GCCTT 42715 ||||| Sbjct 32415899 GCCTT 32415903 Score = 98.7 bits (108), Expect = 2e-15 Identities = 268/407 (66%), Gaps = 5/407 (1%) Strand=Plus/Plus Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 || || |||||||| || |||| | | |||||||||||||| | ||| || || Sbjct 32416509 GGTATTTTCTTCTCTGGAAGCTTCTGCGCTATCTTCTGGCTCAAAAAACGAGGACTC-AT 32416567 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || ||||| ||||| ||||||||||| | ||||| ||||| || | || || Sbjct 32416568 GCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACACTGCGATTT 32416627 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 || || || || | ||| | || ||||| |||| | | ||||||| || ||| Sbjct 32416628 CGCGTGTCTGCTCTACTC---TCTGCTGAGGCAGAAGCTCACCGAGGAGCGCGTGAGGGA 32416684 Query 42908 CATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTC 42967 || | | ||| |||||||| || ||| |||||| | | |||||||| | Sbjct 32416685 GATTGTGAGGGACGCCGTGGATATTGAGCGGGAGTTTGTGTGCGACGCGCTGCCCTGCGC 32416744 Query 42968 CCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCATCT 43027 |||| || |||||| || | ||| | | ||||| ||| || || || | | Sbjct 32416745 GTTGGTGGGGATGAACGGTGATTTGATGAGTCAATACATTGAGTTTGTGGCAGATCGGTT 32416804 Query 43028 CCTGTGCCAGATGGGTCTCAGCCGCCTCTACAACACGCCGTGCCCCTTCGACTTTATGGA 43087 ||| | | | || | | | ||||| | | ||| ||||| | ||||| Sbjct 32416805 GCTGGGGGCGCTTGGGTGCGGGAAGGTGTACAATGTTCAGAACCCGTTCGATTGGATGGA 32416864 Query 43088 GAACATCTCGTTGGAGGGCAAGACCAACTTTTTCGAGAAGCGCGTCG 43134 | || ||| || |||| ||||||||||| |||||||||||||||| Sbjct 32416865 GCTGATTTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCG 32416911 >seq16 Length=37887014 Score = 125 bits (138), Expect = 1e-23 Identities = 280/417 (67%), Gaps = 5/417 (1%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| ||||||||||| || | ||| |||||| || |||||| | ||||| Sbjct 5527368 ATCTGGGAAATGTACAAGAAAGCCGAAGCCTCGTTCTGGACGGCGGAGGAGGTGGACCTC 5527309 Query 42360 GCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTCAAAAA 42418 | ||||| | ||| |||||| || ||| | || ||| ||| ||| | Sbjct 5527308 TCGCAGGACCTCCGCCA-CTGGGACTCCCTGACCGACGGCGAGCGCCACTTCGTCAGTCA 5527250 Query 42419 CATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTT 42478 | | || ||||||||||||||||| |||||||| || ||||||||| || | || Sbjct 5527249 CGTCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTACTTGAGAACCTCGCTGGGCGCTT 5527190 Query 42479 CATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGA 42538 || ||| || | || | ||||| ||| |||||||||||||||||| ||||| || Sbjct 5527189 CACGAAGGAAATCCAAATCCCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGA 5527130 Query 42539 GAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGA 42598 |||| | ||||| ||| ||||| | || ||| | || |||||| ||| || | | Sbjct 5527129 GAACATTCACTCCGAGATGTACAGCCTCCTCCTCGAAACCTACATCAAGGACTCCTCCCA 5527070 Query 42599 GCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTG 42658 | | | || ||| ||||| || || || || ||| | | ||||| || | || Sbjct 5527069 GAAGAGCCACCTCTTCCGCGCCATCGACACCATCCCGTGCGTTACCAAGAAAGCCCAGTG 5527010 Query 42659 GGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTT 42715 ||| || ||||||||| | || || | |||| |||| | || || ||||| Sbjct 5527009 GGCCCTACGCTGGATCGA---TTCCTCCGACTCCTTCGCCGAGCGTCTCGTTGCCTT 5526956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944325141150160