Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq17 95.1 1e-14 seq13 95.1 1e-14 seq9 91.5 1e-13 seq15 87.8 1e-12 seq10 82.4 6e-11 >seq17 Length=41641078 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | |||| || ||||| ||| || ||| ||||||||| || || ||||| || Sbjct 3125155 ACCTCCACGAAGCCTCAACACCAAATGCAGAGTGGACTCCTTCTGGATATTATAATCAGC 3125096 Query 33960 CAATTGT-CGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || || || | || |||| ||||| || ||||| || || | |||||| || | Sbjct 3125095 -AAGAGTACGACCATCTTCCAGCTGCTTCCCAGCAAAGATAAGCCTCTGCTGGTCTGGTG 3125037 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | |||||||||| || ||| ||| | | | | |||||| | ||| Sbjct 3125036 GAATCCCCTCTTTGTCCTGTATCTTTGCCTTCACGTTATCGATGGTATCAGAACTTTCAA 3124977 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 ||| | ||||||||||||||||| | || || |||||||||||||| Sbjct 3124976 CTTCTAAAGTTATTGTTTTTCCGGTCAAAGTCTTAACAAAGATTTGCAT 3124928 >seq13 Length=45874162 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 33898 AAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCT 33957 ||||| || | || || || || ||||| | ||| ||||||||||| ||||||||| Sbjct 23087488 AAACCACCGCGAAGGCGAAGGACGAGATGCAAGGTGGATTCCTTCTGAATATTGTAATCT 23087547 Query 33958 GCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 ||||| || | || |||| |||||| || ||||| || || | ||||||||| Sbjct 23087548 GCCAAGGTACGACCATCTTCCAGTTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCAGGT 23087607 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCG 34077 || | || ||| |||||| ||| ||| ||| | | | |||||| | ||| Sbjct 23087608 GGAATGCCCTCCTTGTCCTGAATCTTTGCCTTCACATTATCAATGGTATCAGAACTTTCA 23087667 Query 34078 CATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || | ||||| |||||||| || | || || |||||||||||||| Sbjct 23087668 ACCTCCAAAGTTATGGTTTTTCCAGTCAAAGTCTTAACAAAGATTTGCAT 23087717 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/240 (69%), Gaps = 18/240 (8%) Strand=Plus/Plus Query 33897 GAAACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATC 33956 |||||| || | || || || || ||||| || ||| ||||||||||| |||||||| Sbjct 23082791 GAAACCACCACGAAGGCGGAGGACAAGATGCAGGGTGGATTCCTTCTGAATATTGTAATC 23082850 Query 33957 TGCCAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCAC 34016 ||||| || | || ||||||||||| || ||||| || || | ||||||||| Sbjct 23082851 CGCCAAGGTACGACCATCTTCCAATTGCTTCCCAGCAAAAATAAGCCTCTGCTGATCTGG 23082910 Query 34017 CGGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTC 34076 || | | ||| |||||| | | | ||||||| ||||| ||||| | | || Sbjct 23082911 TGGAATACCCTCCTTGTCC-TGAATCTTTGCTT--------TCACATTATCAATGGTATC 23082961 Query 34077 ---GCATTCGACC------GTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||| ||| |||| || || || || || || |||||||| |||||||| Sbjct 23082962 AGAGCTTTCCACCTCCAAGGTTACGGTCTTCCCTGTCAGAGTCTTCACAAATATTTGCAT 23083021 Score = 87.8 bits (96), Expect = 1e-12 Identities = 101/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 ||| ||||||| || ||||||| ||||| ||| |||||||||||||||||||| || Sbjct 23087946 ACCACCTCTCAAACGAAGCACCAAGTGAAGGGTGGATTCCTTCTGAATGTTGTAATCAGC 23088005 Query 33960 CAATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGG 34019 | || | || || | ||| || |||||||| ||||| | ||||||||| || Sbjct 23088006 AAGGGTTCTTCCATCCTCAAGTTGTTTACCGGCAAAAATCAGCCTCTGCTGATCTGGGGG 23088065 Query 34020 CACGCTCTCTTTGTCC 34035 | || |||||||||| Sbjct 23088066 GATGCCCTCTTTGTCC 23088081 >seq9 Length=50189283 Score = 91.5 bits (100), Expect = 1e-13 Identities = 98/127 (77%), Gaps = 2/127 (2%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 || || || || || || || ||| ||||||||| |||||||| || || || || || Sbjct 1934954 AGGCGGAGGACGAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC-AAGGGTGCG 1934896 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | |||| |||| ||||| ||||| || |||||||||||||||||| ||| | || ||| Sbjct 1934895 CCCGTCCTCCAGCTGCTTTCCGGCGAAGATCAGGCGCTGCTGATCCGGCGGGATGCCCTC 1934836 Query 34029 TTTGTCC 34035 |||||| Sbjct 1934835 CTTGTCC 1934829 >seq15 Length=51756343 Score = 87.8 bits (96), Expect = 1e-12 Identities = 95/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGTCGC 33969 || || || || || ||||||||| ||||||||| |||||||| || || | || Sbjct 10430791 AGGCGGAGGACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCGAGGGTGCGG 10430732 Query 33970 TCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTCT 34029 |||| |||| ||||| ||||| || |||||||||||||| ||| ||| | || ||| Sbjct 10430731 CCGTCCTCCAGCTGCTTACCGGCGAAGATCAGGCGCTGCTGGTCCGGCGGGATGCCCTCC 10430672 Query 34030 TTGTCC 34035 |||||| Sbjct 10430671 TTGTCC 10430666 >seq10 Length=51566898 Score = 82.4 bits (90), Expect = 6e-11 Identities = 151/219 (69%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 33910 AGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCCAATTGT-CG 33968 |||| || || || ||||||||| |||||||||||| || ||||||| ||| || || Sbjct 4576571 AGCCTGAGGACAAGGTGAAGCGTGGACTCCTTCTGAATATTATAATCTG-CAAGCGTGCG 4576629 Query 33969 CTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGCACGCTCTC 34028 | || || | ||||| || || || || || |||||||||||| || | | ||| Sbjct 4576630 TCCATCCTCAAGCTGCTTCCCTGCGAAGATAAGACGCTGCTGATCCGGTGGAATCCCCTC 4576689 Query 34029 TTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGCATTCGACCGT 34088 || ||| ||| ||| ||| | | | | |||||| | || || | || Sbjct 4576690 CTTATCCTGAATCTTTGCCTTCACGTTATCGATCGTATCAGAACTCTCCACCTCCAGAGT 4576749 Query 34089 TATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 || ||||||||||| || || ||||| ||||| ||||| Sbjct 4576750 AATCGTTTTTCCGGTGAGCGTCTTCACGAAGATCTGCAT 4576788 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397056636515182