Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 8e-15 seq16 95.1 3e-14 seq19 93.3 9e-14 >seq3 Length=45779434 Score = 96.9 bits (106), Expect = 8e-15 Identities = 291/444 (66%), Gaps = 4/444 (1%) Strand=Plus/Plus Query 243284 AATCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGA 243343 |||| || || ||||| ||||| || | | ||||| || || || | || ||||| | Sbjct 40573086 AATCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAA 40573145 Query 243344 GTTTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTA 243403 | || ||||| || |||||||| ||| || | ||||| || ||| | || | Sbjct 40573146 GCTTTTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCA 40573205 Query 243404 ACGAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCG-GTGAGCTTATGTATTCA 243462 |||| ||||| || || ||||| |||||| | |||| ||| || |||| || Sbjct 40573206 ACGAACTCATCTCGCGAGATGAGGGGCTTCACTGCGACTTCGCGTGT-CTCTTGTACTCG 40573264 Query 243463 AAGCTCCAGAACAAGCTACCATTCGAAACG-GTCAAACAAATCATCACAGAAGCAGTTGA 243521 ||| ||| ||||| | | | || || | | || | || || || || Sbjct 40573265 CTTCTCAGGAAGAAGCTTAG-TGAGGAGCGCGTGAGGGAGATTGTGCGTGACGCGGTGGA 40573323 Query 243522 AAACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGA 243581 | || | ||| || | |||||||| |||| || | | | || |||||| || Sbjct 40573324 GATTGAGAGGGAGTTTGTGTGCGACGCGCTTCCGTGTGCGTTGGTGGGGATGAACGGGGA 40573383 Query 243582 ACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGA 243641 | ||| | | ||| || || || || || || || | | |||||||| | || Sbjct 40573384 GTTGATGAGTCGGTATATTGAGTTTGTTGCGGATCGGTTGCTGGATGCGCTTGGGTGTGG 40573443 Query 243642 GAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAA 243701 ||| |||||| | |||| ||||||| | |||||||| ||||||||||| ||||| Sbjct 40573444 GAAGGTGTACGGTGCTCAGAATCCCTTTGATTGGATGGAGCTTATTTCGCTTCAGGGGAA 40573503 Query 243702 AACTAACTTCTTCGAAAAGCGTGT 243725 |||||||||||| || ||||| || Sbjct 40573504 AACTAACTTCTTTGAGAAGCGCGT 40573527 >seq16 Length=37887014 Score = 95.1 bits (104), Expect = 3e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 243541 TGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATC 243600 |||||||| |||| ||| | | | || |||||| ||| | ||| | |||||||| Sbjct 5526398 TGCGACGCGCTTCCCTGCGCGTTGGTGGGGATGAACGGTGATTTGATGAGCCAGTACATT 5526339 Query 243601 GAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAG 243660 ||||| || || || || | | ||||| || | | ||| |||||||| || Sbjct 5526338 GAATTTGTTGCGGATCGGTTGCTGGGTGCGCTAGGGTGCGGGAAGGTGTACAATGTTCAG 5526279 Query 243661 AACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAG 243720 || || || | | |||||||||||||| || || ||||| || ||||||||||| ||| Sbjct 5526278 AATCCGTTCGATTGGATGGAGCTCATTTCTCTGCAGGGGAAGACCAACTTCTTCGAGAAG 5526219 Query 243721 CGTGTCAGTGATTATCA 243737 || ||| | || ||||| Sbjct 5526218 CGCGTCGGGGAATATCA 5526202 >seq19 Length=50746504 Score = 93.3 bits (102), Expect = 9e-14 Identities = 280/426 (66%), Gaps = 6/426 (1%) Strand=Plus/Plus Query 243316 TGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCCATCTTTTGGCTGCGGAACAAA 243375 || ||| |||||||| | || || || || |||||||| ||||| ||||| || | Sbjct 32416500 TGTGTTAAAGGTATTTTCTTCTCTGGAAGCTTCTGCGCTATCTTCTGGCTCAAAAAACGA 32416559 Query 243376 GGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATCAGTCGCGACGAGGGCCTTCAC 243435 || | ||||| || ||| | | || ||||| |||| ||||||||| || || ||| Sbjct 32416560 GGACTCATGCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACAC 32416619 Query 243436 CAACAGTTCG-GTGAGCTTATGTATTCAAAGCTCCAGAACAAGCT-ACCATTCGAAACG- 243492 | |||| ||| || | || || ||| | | ||||| ||| | | || Sbjct 32416620 TGCGATTTCGCGTGT-CTGCTCTACTCTCTGCTGAGGCAGAAGCTCACCGA--GGAGCGC 32416676 Query 243493 GTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAATTCATTTGCGACGCTATT 243552 || | | || | | || || || || | || ||| || | |||||||| | Sbjct 32416677 GTGAGGGAGATTGTGAGGGACGCCGTGGATATTGAGCGGGAGTTTGTGTGCGACGCGCTG 32416736 Query 243553 CCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCC 243612 || ||| | | | || |||||| ||| | ||| | || ||||| || || || || Sbjct 32416737 CCCTGCGCGTTGGTGGGGATGAACGGTGATTTGATGAGTCAATACATTGAGTTTGTGGCA 32416796 Query 243613 GACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCC 243672 || || | | |||||||| | | ||| |||||||| ||||||| || | Sbjct 32416797 GATCGGTTGCTGGGGGCGCTTGGGTGCGGGAAGGTGTACAATGTTCAGAACCCGTTCGAT 32416856 Query 243673 TTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAAAAGCGTGTCAGTGAT 243732 | |||||||| |||||||| || || || || ||||||||||| ||||| ||| | || Sbjct 32416857 TGGATGGAGCTGATTTCGCTGCAGGGAAAGACCAACTTCTTCGAGAAGCGCGTCGGGGAG 32416916 Query 243733 TATCAA 243738 |||||| Sbjct 32416917 TATCAA 32416922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102863170395850