Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq3 141 1e-28 seq15 113 5e-20 seq9 111 2e-19 >seq3 Length=45779434 Score = 141 bits (156), Expect = 1e-28 Identities = 387/580 (67%), Gaps = 17/580 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGA-TATTCTCCA 125816 ||| |||||||| |||||||| |||||||| || ||||| | |||| | || ||||| Sbjct 40573537 GTACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTG-AAGCGAAATAAGCTCCA 40573479 Query 125817 TAAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCAC-CCCAATCTGTTTGAGGAG 125874 | ||||||| || |||| ||| || | || ||| ||||| | | || | Sbjct 40573478 TCCAATCAAAGGGATTCT--GAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAA 40573421 Query 125875 ACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTT 125934 ||||||| || ||||||| ||| | |||| ||| |||||| || | | Sbjct 40573420 CCGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCAACGC 40573361 Query 125935 ACATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGC 125994 ||| || |||||||| | | ||| || ||||||| ||||| || || ||||| || | Sbjct 40573360 ACACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCACAATCTC 40573301 Query 125995 GTGAATGGTGTCCACCCCAGGTCTATTGCGCAAAGTCTTG---AAGAGTTCCACGGCAAA 126051 | | ||| | | | | | || | | | | | ||||| |||| | || Sbjct 40573300 CCTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGA--CACG-CGAA 40573244 Query 126052 CTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCAT 126111 || ||| || ||||| || || ||||||||||| || |||||| || || ||||| Sbjct 40573243 GTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCAT 40573184 Query 126112 GAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || |||||||| | ||| || ||||| ||||| || |||||||| |||||||| Sbjct 40573183 TAACCCACGCTTCTTGAGCCAAAATATCGCGCAAAAGCTTCCGGAGAAGAATATTCCCTC 40573124 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTT 126231 || || ||||| || | ||| ||||| || ||||| || | || | ||| Sbjct 40573123 GACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGA---GGCATCGATCCAGCG 40573067 Query 126232 CATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTC 126291 | |||||||| || ||||| ||| || |||| ||| | || || ||| || Sbjct 40573066 GAGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGACG 40573007 Query 126292 CTTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 126330 || ||||||| |||| ||||||||||| | |||| ||| Sbjct 40573006 ATTTTTTTCTG-TGGAGTCTTTGATGTAGGTTTCTAAGAG 40572968 >seq15 Length=51756343 Score = 113 bits (124), Expect = 5e-20 Identities = 278/416 (67%), Gaps = 12/416 (3%) Strand=Plus/Minus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 13381209 TCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 13381150 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 13381149 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 13381093 Query 10940 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 ||| || | || | |||| | || || || ||||||||||| | ||||| || || Sbjct 13381092 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 13381033 Query 10997 GGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || ||| |||| || | ||| ||||||| ||||| ||||| | Sbjct 13381032 GGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAA 13380975 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 11113 ||||||| || ||||| | | | | | |||| || || ||||| | |||||| Sbjct 13380974 CAAACATCTCTACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCT 13380916 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCA 11173 || || || || | || |||||||| || ||||| || | ||||| |||| Sbjct 13380915 GCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACCT 13380856 Query 11174 CGTGGGATCCTGGCACCACTTCCAAAGTAGCGCTCAGGTTGTTTAAGGAAGTCCAC 11229 ||| || | || ||| || | | | |||||| | ||||| || ||||| Sbjct 13380855 TTTGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTAAGAAATTCCAC 13380800 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Plus Query 173691 CGATGGAAAACTCCGAAGAATAGATGTTCGTCAACTTGGCACCGTAGCCATTGCGTCCAC 173750 ||||| |||||||| || ||||||| || | ||||||||| || || |||||||| | Sbjct 51501862 CGATGACAAACTCCGTGGAGAAGATGTTAGTGAGCTTGGCACCATAACCGTTGCGTCCGC 51501921 Query 173751 CAACAATTCTCTTCTTGTTGTCATCGTAGTTTGTACTCGTGAGGAGGTGACCAAATGTAA 173810 | | | |||||| |||||||| |||||| | || ||||||||||| || || | | Sbjct 51501922 CGGTAGTCTTCTTCTCGTTGTCATTGTAGTTGCTGCTGGTGAGGAGGTGGCCGAAGATGA 51501981 Query 173811 GTTCTGG 173817 |||| || Sbjct 51501982 GTTCGGG 51501988 >seq9 Length=50189283 Score = 111 bits (122), Expect = 2e-19 Identities = 231/338 (68%), Gaps = 12/338 (4%) Strand=Plus/Minus Query 10820 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 10879 ||||| || |||| | ||| || || || ||||||| ||| || || | ||||| Sbjct 4611952 TCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 4611893 Query 10880 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATA 10939 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 4611892 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 4611836 Query 10940 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAC 10996 ||| || | || | |||| | || || || ||||||||||| | ||||| || || Sbjct 4611835 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 4611776 Query 10997 GGTTGATTTTCACGGGCAACTTC--AAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || ||| || ||| |||| || | ||| ||||||| ||||| ||||| | Sbjct 4611775 GGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAA 4611718 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTGGATTCACCC 11113 ||||||| || ||||| | | | | | |||| || || ||||| | |||||| Sbjct 4611717 CAAACATCTCTACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACCT 4611659 Query 11114 GCGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 || || || || | || |||||||| || ||||| Sbjct 4611658 GCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGG 4611621 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597344706898280