Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq3 129 7e-25 seq15 105 8e-18 seq9 105 8e-18 >seq3 Length=45779434 Score = 129 bits (142), Expect = 7e-25 Identities = 382/579 (66%), Gaps = 15/579 (3%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| ||||| || |||||||| |||||||| || ||||| | || ||| |||||| Sbjct 40573537 GTACTCCCCAACGCGCTTCTCAAAGAAGTTAGTTTTCCCCTGAAGCGAAATAAGCTCCAT 40573478 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTG-TTGGCAC-CCCAATCTGTTTGAGGAGA 127348 ||||||| || |||| ||| || | || ||| ||||| | | || | Sbjct 40573477 CCAATCAAAGGGATTCT--GAGCACCGTACACCTTCCCACACCCAAGCGCATCCAGCAAC 40573420 Query 127349 CGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTA 127408 ||||||| || ||||||| ||| | |||| ||| |||||| || | | | Sbjct 40573419 CGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCACCAACGCA 40573360 Query 127409 CATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCG 127468 || || |||||||| | | ||| || ||||||| ||||| || || || || || | Sbjct 40573359 CACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCACAATCTCC 40573300 Query 127469 TGAATAGTGTCCACCCCAGGTCTATTGCGTAAAGTCTTG---AAGAGTTCCACAGCAAAC 127525 | ||| | | | | | || | | | | | ||||| ||| || || Sbjct 40573299 CTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGTACAAGAGA--CAC-GCGAAG 40573243 Query 127526 TCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATG 127585 || ||| || ||||| || || ||||||||||| || |||||| || || ||||| Sbjct 40573242 TCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGAGCCCCGGCATT 40573183 Query 127586 AGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCC 127645 | || |||||||| | ||| || ||||| ||||| || |||||||| || ||||| Sbjct 40573182 AACCCACGCTTCTTGAGCCAAAATATCGCGCAAAAGCTTCCGGAGAAGAATATTCCCTCG 40573123 Query 127646 ACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAACCACTTC 127705 || || ||||| || | || ||||| || ||||| || | ||| | ||| Sbjct 40573122 ACGCAAGCGAATGCCACGAGGCGCTCCGCGAAGGATTCTGA---GGCATCGATCCAGCGG 40573066 Query 127706 ATCGCCCACTGTGCCTTTTTCTCGATACATGGGACGGTCTGGATCGCTTCAAAGAGTTCC 127765 | |||||||| || ||||| ||| ||||||| ||| | || || ||| || Sbjct 40573065 AGGGCCCACTGGGCTTTTTTGGTGATGCATGGGATGGTGTTTATGGCGCGAAACAGACGA 40573006 Query 127766 TTCTTTTCTGATGGA-TCTTTGATGTACTTATCTATGAG 127803 || ||||||| |||| ||||||||||| | |||| ||| Sbjct 40573005 TTTTTTTCTG-TGGAGTCTTTGATGTAGGTTTCTAAGAG 40572968 >seq15 Length=51756343 Score = 105 bits (116), Expect = 8e-18 Identities = 179/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || |||| | ||| || || || ||||||| ||| || || | || || Sbjct 13381209 TCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 13381150 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 13381149 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 13381093 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 13381092 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 13381033 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 13381032 GGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCAA 13380975 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 13380974 CAAACATCTCTACAAA 13380959 >seq9 Length=50189283 Score = 105 bits (116), Expect = 8e-18 Identities = 179/256 (70%), Gaps = 10/256 (4%) Strand=Plus/Minus Query 12735 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCGAAG 12794 ||||| || |||| | ||| || || || ||||||| ||| || || | || || Sbjct 4611952 TCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAAT 4611893 Query 12795 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGCATA 12854 |||||||| || ||||| |||||||||| ||| ||||| | |||||||||| | | Sbjct 4611892 CCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCTCC---A 4611836 Query 12855 CCA---CCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 ||| || | || | |||| | || || || |||||||| |||| ||||| || || Sbjct 4611835 CCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCAT 4611776 Query 12912 GGTTGATTTTCACGGGCAACTTCA--AAGATATCTCGCACTCTCTTGGCACCGACACCCA 12969 || ||| || ||| |||| || | ||| || |||| ||||| ||||| | Sbjct 4611775 GGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCAA 4611718 Query 12970 CAAACATCTCCACAAA 12985 |||||||||| ||||| Sbjct 4611717 CAAACATCTCTACAAA 4611702 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613498066411560