Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq3 156 7e-33 seq19 138 2e-27 seq16 93.3 7e-14 >seq3 Length=45779434 Score = 156 bits (172), Expect = 7e-33 Identities = 240/338 (71%), Gaps = 11/338 (3%) Strand=Plus/Minus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAGTTGATCCCCA 159803 ||||||||| || || ||||| || || || | || |||| ||| | ||| ||||||| Sbjct 40573427 CCAGCAACCGATCCGCAACAAACTCAATATACCGACTCATCAACTCCCCGTTCATCCCCA 40573368 Query 159804 GCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCA 159863 || | | || ||||| || ||| ||||||| |||||||||| ||||| || || Sbjct 40573367 CCAACGCACACGGAAGCGCGTCGCACACAAACTCCCTCTCAATCTCCACCGCGTCACGCA 40573308 Query 159864 CAATCTGCGAGACACGTTCGTACCCCGGCTTG--CCCAAAATGTG-GTCCTTAAACAGGA 159920 |||||| | || || || | | |||| || | | | | || ||| || Sbjct 40573307 CAATCTCCCTCACGCGCTCCTCACTAAGCTTCTTCCTGAGAAGCGAGT------ACAAGA 40573254 Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 | ||||| ||||||||||| || ||||| || || ||||||| |||||||| | | ||| Sbjct 40573253 GACACGCGAAGTCGCAGTGAAGCCCCTCATCTCGCGAGATGAGTTCGTTGGAGAAGGTGA 40573194 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGC-ACCGCTAAAA 160039 | |||||||| | ||||||| ||||||||||| || | ||||||||| ||| || Sbjct 40573193 GCCCCGGCATTAACCCACGCTTCTTGAGCCAAAATATCG-CGCAAAAGCTTCCGGAGAAG 40573135 Query 160040 AAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTC 160077 || || ||||| ||| || || |||||||| | ||| Sbjct 40573134 AATATTCCCTCGACGCAAGCGAATGCCACGAGGCGCTC 40573097 >seq19 Length=50746504 Score = 138 bits (152), Expect = 2e-27 Identities = 263/384 (68%), Gaps = 10/384 (3%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| ||||| Sbjct 32416904 CTTCTCGAAGAAGTTGGTCTTTCCCTGCAGCGAAATCAGCTCCATCCAATCGAACGGGTT 32416845 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || | || |||| | || || ||| ||||||||| ||||||||||| || Sbjct 32416844 CTGAACATTGTACACCTTCCCGCACCCAAGCGCCCCCAGCAACCGATCTGCCACAAACTC 32416785 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| || |||| |||| ||| ||||||| || | ||| ||||| || | Sbjct 32416784 AATGTATTGACTCATCAAATCACCGTTCATCCCCACCAACGCGCAGGGCAGCGCGTCGCA 32416725 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACCC 159888 || ||||||| |||||| || || || || ||||||||| | || || || | Sbjct 32416724 CACAAACTCCCGCTCAATATCCACGGCGTCCCTCACAATCTCCCTCACGCGCTCCTCGGT 32416665 Query 159889 CGGCT--TGCC-CAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCC 159945 ||| |||| || | || | || || ||||| || |||||||| || || Sbjct 32416664 GAGCTTCTGCCTCAGCAGAGAGT------AGAGCAGACACGCGAAATCGCAGTGTAGCCC 32416611 Query 159946 CTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTT 160005 ||||| ||||| |||| ||||| || | |||| |||||||||| || || ||| Sbjct 32416610 TTCGTCGCGAGAAATGAGTTCGTTTGAGAAAGTGAGCCCCGGCATGAGTCCTCGTTTTTT 32416551 Query 160006 GAGCCAAAAAATGGCCGCAAAAGC 160029 |||||| || || | |||| |||| Sbjct 32416550 GAGCCAGAAGATAG-CGCAGAAGC 32416528 >seq16 Length=37887014 Score = 93.3 bits (102), Expect = 7e-14 Identities = 153/221 (69%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| || || Sbjct 5526219 CTTCTCGAAGAAGTTGGTCTTCCCCTGCAGAGAAATGAGCTCCATCCAATCGAACGGATT 5526278 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 || || | || |||| | || || || ||||||||| || || |||||||| Sbjct 5526279 CTGAACATTGTACACCTTCCCGCACCCTAGCGCACCCAGCAACCGATCCGCAACAAATTC 5526338 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGA 159828 ||||| | |||| |||| ||| ||||||| || | ||| ||||| || | Sbjct 5526339 AATGTACTGGCTCATCAAATCACCGTTCATCCCCACCAACGCGCAGGGAAGCGCGTCGCA 5526398 Query 159829 CAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCT 159869 || ||||||| ||||| || ||||| || ||||||||| Sbjct 5526399 CACAAACTCCCGTTCAATGTCCACCGCGTCCTTCACAATCT 5526439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795143362126960