Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq15 143 3e-29 seq9 138 1e-27 seq5 127 3e-24 seq8 118 1e-21 seq3 118 1e-21 seq20 107 2e-18 seq19 104 3e-17 seq4 89.7 6e-13 seq6 86.0 8e-12 >seq15 Length=51756343 Score = 143 bits (158), Expect = 3e-29 Identities = 289/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||||| | || || || || ||||||| ||||| || | ||||| Sbjct 13381210 ATCAAGAATGTCAACCCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAA 13381151 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||| ||||||||||| || || | || ||||| | |||||||||| || Sbjct 13381150 TCCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCT---CC 13381094 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 13381093 ACCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 13381034 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| ||| || || |||| || | ||| || || || || || |||||| Sbjct 13381033 TGGGGCATTCTCTTTGGC--CTTCCTGAATAAATCGCGGACTCGAGAAGCACCAACACCA 13380976 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | |||| || || |||||| | |||||| Sbjct 13380975 ACAAACATCTCTACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACC 13380917 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || || | ||| ||||| || || || || ||| | || || |||| Sbjct 13380916 TGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGACCAACAAGAAGAACACC 13380857 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||| || || ||| || | | |||||||| | ||||||||| ||||| | Sbjct 13380856 TTTTGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTAAGAAATTCCACCAC 13380797 Query 16331 CTC 16333 ||| Sbjct 13380796 CTC 13380794 >seq9 Length=50189283 Score = 138 bits (152), Expect = 1e-27 Identities = 288/423 (68%), Gaps = 12/423 (3%) Strand=Plus/Minus Query 15917 ATCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTATCAAA 15976 |||||| || ||||| | || || || || ||||||| ||||| || | ||||| Sbjct 4611953 ATCAAGAATGTCAACTCTGTTAGTAGCTGCAATGACAATGATACCGGTATTACCCTCAAA 4611894 Query 15977 ACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCAT 16036 |||||||| ||||||||||| || || | || ||||| | |||||||||| || Sbjct 4611893 TCCATCCATTTCTGTCAAAAGTTGATTGAGGGTCTGTTCTCTTTCATCATTCCCT---CC 4611837 Query 16037 ACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 |||| |||| || | |||| |||| || |||||||| ||||||| || || ||||| Sbjct 4611836 ACCAATTCCAGTACCTCTTTGCCTTCCAACAGCATCAATTTCATCAACAAAAACAATGCA 4611777 Query 16094 TGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACACCA 16151 ||| ||| || || |||| || | ||| || || || || || |||||| Sbjct 4611776 TGGAGCATTCTCTTTGGC--CTTCCTGAATAAATCACGGACTCGAGAAGCACCAACACCA 4611719 Query 16152 ACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACC 16210 ||||||||||| ||||| | | | | | |||| || || |||||| | |||||| Sbjct 4611718 ACAAACATCTCTACAAACTCAGAACCTG-AGATTGAGAAAAATGGGACACCTGCTTCACC 4611660 Query 16211 CGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACC 16270 ||||| || || | ||| ||||| || || || || || | || || |||| Sbjct 4611659 TGCAATAGCCTTTGCTAAAAGTGTCTTCCCAGTTCCAGGAGGGCCAACAAGAAGAACACC 4611600 Query 16271 TCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAAT 16330 | ||| || || ||| || | |||||||||| | ||| ||||| ||||| | Sbjct 4611599 TTTTGGTATGCGAGCCCCAACAGCAGTGAATCTCTCAGGCTTCTTCAGAAATTCCACCAC 4611540 Query 16331 CTC 16333 ||| Sbjct 4611539 CTC 4611537 >seq5 Length=42234498 Score = 127 bits (140), Expect = 3e-24 Identities = 311/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || ||| | | || ||||| || | ||||| ||||| || |||| ||| Sbjct 32503056 TCAAGAATGTCAGCCCTGTTAGTTGCTGCAACGACAATGATACCAGT---GTTACCCTCA 32503112 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| ||||||||||| ||||| | || || || | |||||||||| | Sbjct 32503113 AACCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCC---A 32503169 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| |||| | | ||| |||| || |||||||| ||||||| ||||| ||| Sbjct 32503170 CCACCAATTCCAGTCCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATG 32503229 Query 16092 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || ||| || || |||| || | ||| || ||||| || || |||| Sbjct 32503230 CAAGGGGCATTCTCTTTGGC--CTTCTTGAACAAATCACGAACACGAGAAGCACCAACAC 32503287 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 ||||||||||||| ||||| | | | | | |||| || || || ||| || |||| Sbjct 32503288 CAACAAACATCTCAACAAACTCAGAACCTG-ATATTGAGAAAAATGGAACACCAGCTTCA 32503346 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || ||||| || ||| | || ||||| || || ||||| ||| | || || | Sbjct 32503347 CCAGCAATAGCCTTGGCTAACAGTGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACT 32503406 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||| || || || ||| || | | |||||||| | ||| ||||| |||||| Sbjct 32503407 CCTTTCGGTATGCGAGCCCCAACAGCAGTGAACCTCTCAGGCTTCTTTAGAAACTCCACA 32503466 Query 16329 ATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||| || || | ||||| | || | ||| ||||||| Sbjct 32503467 ACCTCCATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATC 32503510 Score = 82.4 bits (90), Expect = 9e-11 Identities = 92/123 (75%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | ||||| || ||||| || || || |||||||| | Sbjct 28732902 TCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGTGTCGAAGGAATATTCTTCTCCAAAAGC 28732843 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||| | || | ||||||||||||||| || | ||||| || || |||||||||| Sbjct 28732842 TTTTGCACGATATTTTGGCTCAAGAAGCGCGGGTTAATGCCGGGGCTTACCTTCTCCAAC 28732783 Query 102291 GAG 102293 ||| Sbjct 28732782 GAG 28732780 >seq8 Length=47837022 Score = 118 bits (130), Expect = 1e-21 Identities = 309/464 (67%), Gaps = 18/464 (4%) Strand=Plus/Plus Query 15918 TCAAGGATATCAACGCGATTCGTTGCGGCGATGACAACAATACCTGTTTCGTTA---TCA 15974 ||||| || ||| | | || ||||| || | ||||| |||||||| |||| ||| Sbjct 6551275 TCAAGAATGTCAGCCCTGTTAGTTGCTGCAACGACAATGATACCTGT---GTTACCCTCA 6551331 Query 15975 AAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGC 16034 || |||||||| ||||||||||| ||||| | || || || | |||||||||| || Sbjct 6551332 AACCCATCCATTTCTGTCAAAAGTTGGTTGAGGGTCTGCTCTCTTTCATCATTCCCT--- 6551388 Query 16035 ATACCA---CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 |||| |||| | | ||| |||| || |||||||| ||||||| ||||| ||| Sbjct 6551389 CCACCAATTCCAGTCCCTCTTTGTCTTCCAACAGCATCAATTTCATCAACAAAGACAATG 6551448 Query 16092 CATGGTTGATTTTCGCGAGCGACTTC--AAAGAGATCCCGTACACGCTTGGCGCCCACAC 16149 || || | ||| | || |||| || | ||| || ||||| || || |||| Sbjct 6551449 CAAGG--GGCATTCTCTTTCGCCTTCTTGAACAAATCACGAACACGAGAAGCACCAACAC 6551506 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCA 16208 ||||||||||||| ||||| | | | | | || | || || || ||| || |||| Sbjct 6551507 CAACAAACATCTCAACAAACTCAGAACCTG-ATATAGAGAAAAATGGAACACCAGCTTCA 6551565 Query 16209 CCCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCA 16268 || ||||| || ||| | | ||||| || || ||||| ||| | || || | Sbjct 6551566 CCAGCAATAGCCTTGGCTAACAAGGTCTTCCCAGTTCCTGGAGGACCAACAAGAAGAACT 6551625 Query 16269 CCTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACA 16328 ||| ||||| || ||| || | |||||||| | ||| | ||| ||||| Sbjct 6551626 CCTTTAGGAATGCGAGCCCCAACAGCAGTAAACCTCTCAGGCTTCTTTAAAAACTCCACC 6551685 Query 16329 ATCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||| || || | ||||| | || | ||| ||||||| Sbjct 6551686 ACCTCCATAAAGTCCTGCTTGGCTTCATCCACCCCAGCAACATC 6551729 >seq3 Length=45779434 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | ||||| || || || ||||| || |||||||| || | Sbjct 40573088 TCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAAGC 40573147 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||||| || | ||||||||||||||| || | ||||| || ||| |||||||||| Sbjct 40573148 TTTTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCAAC 40573207 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || ||||| || || ||||| || ||| Sbjct 40573208 GAACTCATCTCGCGAGATGAGGGGCTTCAC 40573237 >seq20 Length=47900577 Score = 107 bits (118), Expect = 2e-18 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| | ||||| || || || | || || |||||||| || | Sbjct 3442469 TCCTTCGCAGAGCGCCTCATGGCATTCGCTTGCGTCTAAGGAATATTCTTCTCCGGAAGC 3442410 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | ||||||||||||||| || | ||| |||| ||| ||||||||| Sbjct 3442409 TTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGTCAGGGCTCACCTTCTCCAAT 3442350 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGCG 102332 || | ||||| || || ||||| || ||| | || || ||| Sbjct 3442349 GAATTCATCTCGCGAGATGAGGGGCTTCACTACGACTTCGCG 3442308 Score = 86.0 bits (94), Expect = 8e-12 Identities = 109/150 (73%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||| | ||| | ||||| || || | | || || |||||||| | | Sbjct 3557733 TCCTTCGCGGAGTGCCTCATGGCATTCGCTTGCATCAAAGGAATATTCTTCTCCAGAAGC 3557674 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || | ||| || ||| |||||||||| Sbjct 3557673 TTCTGCGCGATATTTTGGCTCAAGAAGCACGGGTTAATGTTGGGGCTCACCTTCTCCAAC 3557614 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || || ||||| || || ||||| || ||| Sbjct 3557613 GAACTCATCTCGCGAGATGAGGGGCTTCAC 3557584 >seq19 Length=50746504 Score = 104 bits (114), Expect = 3e-17 Identities = 95/120 (79%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 102201 TGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGA 102260 |||||| | ||||| ||||||||||| |||||||||||| | |||||||| || ||| Sbjct 32416500 TGTGTTAAAGGTATTTTCTTCTCTGGAAGCTTCTGCGCTATCTTCTGGCTCAAAAAACGA 32416559 Query 102261 GGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 || |||||||| || ||| ||||| ||||| || || ||||| ||||| || || ||| Sbjct 32416560 GGACTCATGCCGGGGCTCACTTTCTCAAACGAACTCATTTCTCGCGACGAAGGGCTACAC 32416619 >seq4 Length=52388848 Score = 89.7 bits (98), Expect = 6e-13 Identities = 96/125 (77%), Gaps = 4/125 (3%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||| ||||||||||| |||| ||||||||||||||| ||||||| || |||||| | Sbjct 1502325 AAAGCCATCCATCTCCGTCAGAAGCTGGTTAATAGTCTGTTCCCTCTCGTCATTCCC--A 1502382 Query 16034 CATACCA--CCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATG 16091 | | | | || || | | ||| | || ||||| ||||||||||||||||| || ||| Sbjct 1502383 CCTCCGAGCCCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAAACAATG 1502442 Query 16092 CATGG 16096 || || Sbjct 1502443 CACGG 1502447 >seq6 Length=51416163 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/124 (77%), Gaps = 2/124 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCA-TTCGCTG 16032 ||| ||||||||||| || | |||||| |||||||||||||||| |||||| ||| Sbjct 1474750 AAACCCATCCATCTCAGTAAGAAGCTGATTAATAGTTTGTTCCCTCTCATCATTTCCACC 1474809 Query 16033 GCATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGC 16092 | || | || || | | ||| | || ||||| ||||||||||||||||| || |||| Sbjct 1474810 TCCTAGC-CCCGCCCCTCTCTGCCTCCCAACGGCGTCAATCTCATCAATGAAAACAATGC 1474868 Query 16093 ATGG 16096 | || Sbjct 1474869 ACGG 1474872 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620733158697520