Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq1190 479 4e-130 seq13 383 2e-101 seq14 291 1e-73 seq11 282 6e-71 seq2 140 5e-28 >seq1190 Length=152218 Score = 479 bits (530), Expect = 4e-130 Identities = 685/965 (71%), Gaps = 0/965 (0%) Strand=Plus/Minus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || |||||| | ||| |||| ||||||||||| | ||||||||| | | | Sbjct 1307 ACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCTACTTTATTGACC 1248 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || || || ||||| ||||| || ||||| || || || Sbjct 1247 GCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAGTAGATATTGATGGTATT 1188 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | ||||| ||| |||| ||| || | ||||| ||||| ||||| |||||||| || | Sbjct 1187 CGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATT 1128 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || ||||| || ||||| |||||||| ||| | ||||| Sbjct 1127 CCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGAT 1068 Query 215555 GAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATT 215614 |||||| | ||||| || || |||| |||| || | | |||||| | ||||| | Sbjct 1067 GAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTA 1008 Query 215615 TCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATC 215674 || ||| || | ||||||||||| || | || |||||| | |||||||| Sbjct 1007 GCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGGATT 948 Query 215675 TGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTC 215734 |||||| || || || ||||| | || || ||| || ||| | | ||||| | Sbjct 947 GCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATT 888 Query 215735 GGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATG 215794 |||||||| || || |||| |||||| || ||||| || || || ||||| | ||| Sbjct 887 GGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTTCAATTTTATG 828 Query 215795 TTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCT 215854 |||| || ||||||||||| || ||||| ||||| ||||| |||||||||||||| ||| Sbjct 827 ATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCT 768 Query 215855 GGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTA 215914 ||||| ||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 767 GGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTG 708 Query 215915 ATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAG 215974 ||||| || || || || | |||||| || | ||||||| || || |||||||| Sbjct 707 ATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAA 648 Query 215975 GAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCA 216034 ||||| || || || |||||||| || ||||| ||||| || | ||||||||||| ||| Sbjct 647 GAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCA 588 Query 216035 TCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATC 216094 ||||||||| || | | | || |||||| | || || | ||||| | |||| Sbjct 587 AGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCTGTAGTAGGTATT 528 Query 216095 TGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAAC 216154 ||| || || | ||| || |||||||| |||||| | || |||||||| |||||| Sbjct 527 TGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGTTTCAATTTCAAC 468 Query 216155 CAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGA 216214 || || || || || ||| || ||| ||| ||||| || || ||||| || Sbjct 467 CAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGA 408 Query 216215 GCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATTAGACTTG 216274 || |||||||||||||||||||| || ||||| ||||| || ||||| |||| | Sbjct 407 GCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTA 348 Query 216275 GCTGC 216279 ||||| Sbjct 347 GCTGC 343 >seq13 Length=45874162 Score = 383 bits (424), Expect = 2e-101 Identities = 614/881 (70%), Gaps = 18/881 (2%) Strand=Plus/Plus Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 || || ||||| |||| || ||||| || || || | ||||| ||| |||| ||| || Sbjct 7358216 TTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTA 7358275 Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518 | ||||| ||||| ||||| |||||||| || | |||| ||| || || || || Sbjct 7358276 CTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTG 7358335 Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578 ||||| || ||||| |||||||| ||| | ||||| |||||| | || || || || ||| Sbjct 7358336 CACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATATAACGGCGGTCCT 7358395 Query 215579 TTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGG 215638 | |||| |||| | |||||| | ||||| | || ||| || | ||||| Sbjct 7358396 TATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGG 7358455 Query 215639 GAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTA 215698 |||||| || | || |||||| | ||||| || |||||| |||| || Sbjct 7358456 GAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAATTGCTGTTGCAG---CCGC-----TA 7358507 Query 215699 TCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCT 215758 |||||| | ||| | | ||||| | |||||||| || || |||| | Sbjct 7358508 -CTGCTG---------TTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGT 7358557 Query 215759 ATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAAC 215818 ||||| || ||||| || || || | ||| | ||| |||| || |||||| |||| || Sbjct 7358558 ATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAGGCTAAGCATAAT 7358617 Query 215819 ATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTC 215878 ||||| ||||| ||||| |||||||| | ||| |||||||| ||||| || || || || Sbjct 7358618 ATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGCGGCTCCTTATTT 7358677 Query 215879 TCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAA 215938 ||| ||||| | ||| | || || | | | | ||||| || || || || | ||| Sbjct 7358678 AGTGCTATGCATGATTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAA 7358737 Query 215939 TCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCA 215998 ||| || | ||||||| || || |||||||||||||| || || || |||| ||| Sbjct 7358738 TCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTATAATATTGTAGTTGCT 7358797 Query 215999 CACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTT 216058 || ||||| ||||| || | ||||||||||| ||| ||||||||| || | | | Sbjct 7358798 CATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTA 7358857 Query 216059 CACTTCTTCCTTGCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCA 216118 || |||||| |||| || | ||| | | |||| ||| || || | ||| || Sbjct 7358858 CATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTACCGCTTTAGGTATCAAC 7358917 Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||| | || |||||||| |||||||| || || || || ||| Sbjct 7358918 ACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 7358977 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||| ||||| || || ||||| |||| |||||||||||||||||| Sbjct 7358978 CGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATG 7359037 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGC 216279 || || ||||| ||||| || ||||| |||| | ||||| Sbjct 7359038 CATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 7359078 >seq14 Length=49042192 Score = 291 bits (322), Expect = 1e-73 Identities = 404/566 (71%), Gaps = 0/566 (0%) Strand=Plus/Plus Query 215480 TCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAA 215539 |||||||| || | |||| ||| || || || || ||||| || ||||| |||||| Sbjct 41705868 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 41705927 Query 215540 GCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATCTTCCAC 215599 || ||| | |||| |||||| | || || || | |||| |||| || | | ||| Sbjct 41705928 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 41705987 Query 215600 TTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGATTAGGT 215659 ||| | ||||| | || ||| || | ||||||||||| || | || ||| Sbjct 41705988 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 41706047 Query 215660 ATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCAGTATTC 215719 ||| | |||| ||| |||||| || || || ||||| | || || ||| || ||| Sbjct 41706048 ATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 41706107 Query 215720 CTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATCTCTGGA 215779 || | ||||| | |||||||| || || |||| |||||| || ||||| | || Sbjct 41706108 TTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTTAGGT 41706167 Query 215780 ACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCATTCCAC 215839 || ||||| | ||| |||| || ||||||||||| || ||||| ||||| ||||| ||| Sbjct 41706168 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 41706227 Query 215840 ATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTT 215899 ||||||||||| |||||||| ||||| || || | ||| || ||||| ||||| | Sbjct 41706228 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTCCTTG 41706287 Query 215900 GTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAG 215959 || || |||| | | ||||| || || || || | |||||| || | ||||||| Sbjct 41706288 GTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 41706347 Query 215960 TTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTC 216019 || || |||||||| ||||| || || || |||||||| || ||||| ||||| || | Sbjct 41706348 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 41706407 Query 216020 ATCTTCCAATACGCATCTTTCAACAA 216045 ||||||||||| ||| ||||||||| Sbjct 41706408 ATCTTCCAATATGCAAGTTTCAACAA 41706433 >seq11 Length=34766867 Score = 282 bits (312), Expect = 6e-71 Identities = 386/539 (72%), Gaps = 0/539 (0%) Strand=Plus/Minus Query 215507 GCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTAC 215566 || || || || ||||| || ||||| |||||||| ||| | ||||| |||||| | || Sbjct 15042888 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 15042829 Query 215567 AATGGTGGACCTTTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGC 215626 | ||||| |||| |||| || | | |||||| | ||||| | || ||| Sbjct 15042828 AGCGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 15042769 Query 215627 GGAAGACAGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTAC 215686 || | ||||||||||| || | || || ||| | |||| ||| |||||| || Sbjct 15042768 GGGTGTGAGTGGGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCGATTGCTGTTGCATAT 15042709 Query 215687 TCCGCACCTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCT 215746 || || ||||| | || || ||| || ||| | | ||||| | |||||||| Sbjct 15042708 TCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGC 15042649 Query 215747 TTCTCTGATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAG 215806 || || |||| |||||| || |||| | || || ||||| | ||| |||| || ||| Sbjct 15042648 TTTTCAGATGGTATGCCTCTAAGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAG 15042589 Query 215807 GCTGAGCACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGT 215866 |||||||| || ||||| ||||| ||||| |||||||||||||| |||||||| ||||| Sbjct 15042588 GCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 15042529 Query 215867 GGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACA 215926 || || | ||| ||| ||||| ||||| | || || |||| | | ||||| || || Sbjct 15042528 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACC 15042469 Query 215927 ACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGAGGAAACATACAAC 215986 || || | |||||| || | ||||||| || || |||||||| ||||| || || Sbjct 15042468 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAAT 15042409 Query 215987 ATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGCATCTTTCAACAA 216045 || |||||||| || ||||| ||||| || | ||||||||||| ||| ||||||||| Sbjct 15042408 ATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAA 15042350 >seq2 Length=48577505 Score = 140 bits (154), Expect = 5e-28 Identities = 188/262 (72%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 215710 TGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGG 215769 ||| || ||| | | ||||| | |||||||| || || |||| |||||| || || Sbjct 24951519 TGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGG 24951460 Query 215770 AATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCA 215829 ||| || | || ||||| | ||| |||| || |||||| |||| || ||||| ||||| Sbjct 24951459 AATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCA 24951400 Query 215830 CCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCA 215889 ||||| |||||||||||||| |||||||| ||||| || || | ||| ||| ||| | Sbjct 24951399 TCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTA 24951340 Query 215890 CGGTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTA 215949 ||||| | || || | | | | ||||| || || || || | |||||| || | Sbjct 24951339 TGGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGA 24951280 Query 215950 CGGTTACAAGTTCGGACAAGAG 215971 ||||||| || || |||||| Sbjct 24951279 AGGTTACAGATTTGGTCAAGAG 24951258 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745070507597680