Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq1190 538 4e-148 seq13 421 8e-113 seq14 363 2e-95 seq11 356 3e-93 seq2 140 4e-28 >seq1190 Length=152218 Score = 538 bits (596), Expect = 4e-148 Identities = 700/968 (72%), Gaps = 0/968 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | || || | || |||| ||||| ||||| |||||||| || Sbjct 1319 TGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATTCCT 1260 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 | |||| | ||| | | ||||| | ||||| || || || || || || || Sbjct 1259 ACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCAGTAGAT 1200 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | || ||||| | || || | | ||||| ||||| ||||| ||| Sbjct 1199 ATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATCATTTCT 1140 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | ||||| ||||||||||||||||| Sbjct 1139 GGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCG 1080 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| || | ||||| ||||| || ||||| ||||||||| || || || | | |||||| Sbjct 1079 GCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTC 1020 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || ||||||||| | |||||||||| | ||||| |||||| Sbjct 1019 TTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATG 960 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 959 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTG 900 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | |||||| | ||||||||| || ||||| || ||||||||||| || |||||||| Sbjct 899 ATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACT 840 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || || || ||| | ||||| || || ||||| || ||||||||||| ||||| || ||| Sbjct 839 TTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATG 780 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || ||| || ||||| ||||| | ||| Sbjct 779 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTA 720 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| ||| Sbjct 719 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTT 660 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || ||||| |||||||| || || ||||| || || ||||| || ||||| || | ||| Sbjct 659 GGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATC 600 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 ||||||||||| || || |||||| |||| | | || |||||| | ||| | | ||| Sbjct 599 TTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCCT 540 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| || | | ||||| |||| ||||| || ||| | ||||| Sbjct 539 GTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTAAATGGT 480 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| || | || ||| | ||| ||| || ||| ||||| || Sbjct 479 TTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGAT 420 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || ||||| |||| ||||| |||||||||||||||||||| |||||||| || || ||| Sbjct 419 ATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTC 360 Query 170659 CCACTTGA 170666 || || || Sbjct 359 CCTCTAGA 352 >seq13 Length=45874162 Score = 421 bits (466), Expect = 8e-113 Identities = 622/884 (70%), Gaps = 18/884 (2%) Strand=Plus/Plus Query 169783 TTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTA 169842 |||||| | |||| || || || || | || || || ||||| || | || ||||| Sbjct 7358204 TTTATCATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 7358263 Query 169843 GCAGGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAAC 169902 | || || | | ||||| ||||| ||||| |||||||| || |||| |||| Sbjct 7358264 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 7358323 Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || || ||| | ||||| ||||||||||||||||| ||| || | ||||| ||||| ||| Sbjct 7358324 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 7358383 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 ||||| ||||||||| || || |||| | |||||| | | || | || ||||||| Sbjct 7358384 AACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 7358443 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 || | |||||||||| | ||||| |||||||||||||| || Sbjct 7358444 GGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAAT------------- 7358490 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 |||| || |||| || ||||| ||||| | |||||| | ||||||||| Sbjct 7358491 --TGCT---GTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGC 7358545 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || ||||| || ||||||||||| || |||||||| | || || ||| | ||||| || Sbjct 7358546 TTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAG 7358605 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 || |||| || ||||||||||| ||||| || ||| | || |||||| | ||||| Sbjct 7358606 GCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGC 7358665 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322 || | | || || ||||| | ||| | ||||| | | | | ||||| || || Sbjct 7358666 GGCTCCTTATTTAGTGCTATGCATGATTCCTTGGTAACTTTTAGTTTGATCAGGGAAACC 7358725 Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAAC 170382 ||||| || || || || | || |||| ||| || ||||| || ||||| || || Sbjct 7358726 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTATAAT 7358785 Query 170383 ATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAAT 170442 ||||| | || ||||| || ||||| || | |||||||||||||| || || |||||| Sbjct 7358786 ATTGTAGTTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAT 7358845 Query 170443 AGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTAACTTCA 170502 |||| | | || |||||| ||||| | | ||| ||||| | || ||||| || | Sbjct 7358846 TCTCGTTCTTTACATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTACCGCT 7358905 Query 170503 ATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTA 170562 | ||||| ||| ||||| || ||| | ||||| || || |||||||| || | || Sbjct 7358906 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 7358965 Query 170563 GATGGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGT 170622 ||| | ||| ||| || ||| ||||| || || ||||| |||| ||||| ||| Sbjct 7358966 GATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTTGGT 7359025 Query 170623 ATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGA 170666 ||||||||||||||||| |||||||| || || ||||| || || Sbjct 7359026 ATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGA 7359069 Score = 84.2 bits (92), Expect = 3e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 169906 ATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAAC 169965 || ||| | ||||| ||||||||||||||||| || || | ||||| ||||| || ||| Sbjct 24997023 ATAGGTTTGCACTTTTATCCTATTTGGGAAGCGACATCTGTTGATGAATGGTTATACAAC 24996964 Query 169966 GGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATGGGT 170025 || ||||||||| || || || | | |||||| | | || | || ||||||||| Sbjct 24996963 GGCGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATGGGG 24996904 Query 170026 AGACAGTGGGAACT 170039 | ||||| |||| Sbjct 24996903 CGTGAGTGGAAACT 24996890 >seq14 Length=49042192 Score = 363 bits (402), Expect = 2e-95 Identities = 446/609 (73%), Gaps = 0/609 (0%) Strand=Plus/Plus Query 169876 TCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAA 169935 |||||||| || |||| |||| || || ||| | ||||| ||||||||||||||| Sbjct 41705868 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 41705927 Query 169936 GCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCAC 169995 || ||| || | ||||| ||||| |||||||| | ||||||| || || || | | ||| Sbjct 41705928 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 41705987 Query 169996 TTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGT 170055 ||| | | || | || ||||||||| | |||||||||| | ||||| ||| Sbjct 41705988 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 41706047 Query 170056 ATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTC 170115 |||||||||| ||| ||| |||||||| ||||| || |||| || ||||| ||| Sbjct 41706048 ATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 41706107 Query 170116 TTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGT 170175 || | |||||| | ||||||||| || ||||| || ||||||||||| || | |||| Sbjct 41706108 TTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTTAGGT 41706167 Query 170176 ACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 || || || || ||| | ||||| || || ||||| || ||||||||||| ||||| || Sbjct 41706168 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 41706227 Query 170236 ATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTT 170295 ||| ||| || |||||| | ||||| || | || ||| | ||||| ||||| | Sbjct 41706228 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTCCTTG 41706287 Query 170296 GTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAA 170355 ||||| |||| | | ||||| || || ||||| || || || || | || |||| | Sbjct 41706288 GTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 41706347 Query 170356 TTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTT 170415 || || ||||| |||||||| || || ||||| || || ||||| || ||||| || | Sbjct 41706348 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 41706407 Query 170416 ATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTC 170475 |||||||||||||| || || |||||| ||||| | | || |||||| | ||| | | Sbjct 41706408 ATCTTCCAATATGCAAGTTTCAACAATTGTCGTTCTTTACATTTCTTCTTAGCTGCTTGG 41706467 Query 170476 CCTGTAGTA 170484 || |||||| Sbjct 41706468 CCAGTAGTA 41706476 >seq11 Length=34766867 Score = 356 bits (394), Expect = 3e-93 Identities = 428/582 (74%), Gaps = 0/582 (0%) Strand=Plus/Minus Query 169903 GCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTAT 169962 || || ||| | ||||| ||||||||||||||||| ||| || | ||||| ||||| ||| Sbjct 15042888 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 15042829 Query 169963 AACGGTGGTCCTTATCAATTAGTTATCTTCCACTTCCTTATCGGAATCTCTGCCTACATG 170022 | ||||||||||||| || || || | | |||||| | | || | || ||||||| Sbjct 15042828 AGCGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 15042769 Query 170023 GGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCATAT 170082 || | |||||||||| | ||||| || |||||||||| ||| ||| |||||| Sbjct 15042768 GGGTGTGAGTGGGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCGATTGCTGTTGCATAT 15042709 Query 170083 TCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCT 170142 || ||||| || |||| || ||||| ||||| | |||||| | ||||||||| Sbjct 15042708 TCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGC 15042649 Query 170143 TTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTCCAA 170202 || ||||| || ||||||||| | || | |||||| || || || ||| | ||||| || Sbjct 15042648 TTTTCAGATGGTATGCCTCTAAGAATTTTAGGTACTTTCAATTTTATGATTGTATTTCAG 15042589 Query 170203 GCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGA 170262 || ||||| || ||||||||||| ||||| || ||| ||| || |||||| | ||||| Sbjct 15042588 GCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 15042529 Query 170263 GGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACA 170322 || | || ||| || ||||| ||||| | ||||| |||| | | ||||| || || Sbjct 15042528 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTTGTTTGATCAGGGAAACC 15042469 Query 170323 ACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACATACAAC 170382 ||||| || || || || | || |||| ||| || ||||| |||||||| || || Sbjct 15042468 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAAGAAACCTATAAT 15042409 Query 170383 ATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTTAACAAT 170442 ||||| || || ||||| || ||||| || | |||||||||||||| || || |||||| Sbjct 15042408 ATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAT 15042349 Query 170443 AGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTA 170484 ||||| | | || |||||| | ||| | | | ||||||| Sbjct 15042348 TGTCGTTCTTTACATTTCTTCTTAGCTGCTTGGCTTGTAGTA 15042307 >seq2 Length=48577505 Score = 140 bits (154), Expect = 4e-28 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 170107 GCTGTATTCTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGT 170166 ||||| ||||| | |||||| | ||||||||| || ||||| || ||||||||||| Sbjct 24951518 GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 24951459 Query 170167 ATCTCAGGTACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCAC 170226 || |||| ||| || || || ||| | ||||| || || |||| || ||||||||||| Sbjct 24951458 ATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCAT 24951399 Query 170227 CCATTCCATATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCAC 170286 ||||| || ||| ||| || |||||| | ||||| || | || ||| || ||| | Sbjct 24951398 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTAT 24951339 Query 170287 GGTTCACTTGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTAT 170346 ||||| | ||||| | | | | ||||| || || ||||| || || || || | Sbjct 24951338 GGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAA 24951279 Query 170347 GGATACAAATTCGGACAAGA 170366 || |||| ||| || ||||| Sbjct 24951278 GGTTACAGATTTGGTCAAGA 24951259 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582839322850400