Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq1190 637 5e-178 seq13 520 1e-142 seq14 430 1e-115 seq11 399 2e-106 seq2 158 1e-33 >seq1190 Length=152218 Score = 637 bits (706), Expect = 5e-178 Identities = 736/986 (75%), Gaps = 4/986 (0%) Strand=Plus/Plus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | ||||| ||||| || |||||||| ||||| |||||||||||||| Sbjct 346 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 405 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 || || |||| | ||| ||||||||||| | ||||| ||| ||||| || | Sbjct 406 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 465 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| | || || ||||| ||||| | ||| | ||| | |||| Sbjct 466 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 525 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || || ||||||||||| ||||| || || | ||||||| ||||||||| Sbjct 526 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 585 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 ||||| |||||||| | || || || || || |||||||| ||||||||||| ||| Sbjct 586 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 645 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 || || |||||||| || ||||||| | || || |||||||||| ||||| | | Sbjct 646 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 705 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | |||||| || | ||||||||||| ||| |||||| | || ||||||||| Sbjct 706 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 765 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || || ||||||||||| ||||||||||| || ||||| || ||||| || ||| Sbjct 766 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 825 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| | ||||| || ||||| || || || ||||| ||||| || || || || Sbjct 826 ATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 885 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | |||||| | | ||| ||||||| || |||||||| ||||| || || |||||| Sbjct 886 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 945 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 ||||| ||||||||||| | |||| | ||||||||| ||||| ||||||| |||| Sbjct 946 GCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGT-AGCA 1004 Query 84633 A-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCA 84691 | | |||||| | |||||| | |||| |||| |||||| || || || |||| ||| Sbjct 1005 AGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAACCA 1064 Query 84692 TTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGA 84751 ||| || | | ||| ||||||||||||||||| || || | ||| ||||| ||| | Sbjct 1065 TTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGT 1124 Query 84752 TGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTC 84811 |||| | ||||||||||||||| |||||||| || | ||||| |||| || ||||| Sbjct 1125 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 1184 Query 84812 ACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGACAG 84870 ||| ||||| |||||||| ||||| || ||| ||| || || || || || ||||| || Sbjct 1185 ACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGA-AG 1243 Query 84871 TGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGT 84930 | || | | || ||| |||||||| | | |||||||| |||| || | ||| || | Sbjct 1244 TTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTTT 1303 Query 84931 TAGTGGAGGTGACCCAATCACAGAAG 84956 ||| ||| | ||| | ||||||| Sbjct 1304 CGGTGCTGGTTATCCAGTTACAGAAG 1329 >seq13 Length=45874162 Score = 520 bits (576), Expect = 1e-142 Identities = 655/898 (73%), Gaps = 21/898 (2%) Strand=Plus/Minus Query 83973 GCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCG 84032 || ||||| | ||||| ||||| || |||||||| ||||| |||||||||||||| Sbjct 7359075 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 7359016 Query 84033 GCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTC 84092 || || |||| | ||| ||||||||||| | ||||| ||| ||||| || | Sbjct 7359015 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 7358956 Query 84093 TGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAAC 84152 || ||||| || || ||||| | || || ||||| ||| | | ||| | ||| | |||| Sbjct 7358955 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTAAAC 7358896 Query 84153 CAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAG 84212 ||||| || || | ||||||||||| ||||| || || | ||||||| ||||||||| Sbjct 7358895 CAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 7358836 Query 84213 GAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTT 84272 ||||| |||||||| | || || || || || |||||| | ||||||||||| ||| Sbjct 7358835 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAGGTT 7358776 Query 84273 TCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGG 84332 ||||| |||||||| || ||||||| | || || |||||||||| ||||| | | Sbjct 7358775 TCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 7358716 Query 84333 ATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACA 84392 || | | | |||| || | ||| ||||||| ||| |||| | || ||||||||| Sbjct 7358715 ATCAAACTAAAAGTTACCAAGGAATCATGCATAGCACTAAATAAGGAGCCGCCGAATACA 7358656 Query 84393 CCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACA 84452 ||||| || ||||||||||||| ||||||||||| || ||||| | ||||| || ||| Sbjct 7358655 CCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACA 7358596 Query 84453 AGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGC 84512 | ||| | ||| | || ||||| || || || ||||| ||||| || || || || Sbjct 7358595 ATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 7358536 Query 84513 CCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACA 84572 || | |||||| | | ||| ||||||| || |||||||| |||| Sbjct 7358535 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAAC---AGCA------------ 7358491 Query 84573 CAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCA 84632 || || ||||||||||| | |||| | ||||||||| ||||| ||||||| |||| Sbjct 7358490 ---ATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGT-AGCA 7358435 Query 84633 A-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCA 84691 | | |||||| | |||||| | | || |||| |||||| || || ||||||| ||| Sbjct 7358434 AGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATATAACCA 7358375 Query 84692 TTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGA 84751 ||| || | | ||| ||||||||||||||||| || || | ||| ||||| ||| | Sbjct 7358374 TTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGT 7358315 Query 84752 TGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTC 84811 |||| | ||||||||||||||| |||||||| || | ||||| |||| || ||||| Sbjct 7358314 AGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGCTC 7358255 Query 84812 ACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGAC 84868 ||| ||||| |||||||| ||| | || ||| ||| || | ||||| || |||||| Sbjct 7358254 ACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGATAAATACAGAC 7358197 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/137 (76%), Gaps = 2/137 (1%) Strand=Plus/Plus Query 84605 AAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACCAATCAGGAAGTGAAAGACAACAA 84663 ||||| ||| ||||| |||||||| |||| | |||||| | |||||| | |||| | Sbjct 24996889 AAGTTTCCACTCACGCCCCATGTA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAATTA 24996947 Query 84664 GTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGAT 84723 ||| |||||| || || || |||| |||||| || | | || |||||||||||||||| Sbjct 24996948 GTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGTCGCTTCCCAAATAGGAT 24997007 Query 84724 AGAAATGTAGACCAATA 84740 | || || | ||| ||| Sbjct 24997008 AAAAGTGCAAACCTATA 24997024 >seq14 Length=49042192 Score = 430 bits (476), Expect = 1e-115 Identities = 463/610 (76%), Gaps = 2/610 (0%) Strand=Plus/Minus Query 84162 ACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATAC 84221 || |||||||||||||| ||||| || || | |||||||| ||||||||| ||||| Sbjct 41706475 ACTACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATAT 41706416 Query 84222 TGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCT 84281 |||||||| | || || || || || |||||||| ||||||||||| ||||| || ||| Sbjct 41706415 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 41706356 Query 84282 TGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAA 84341 ||||| || ||||||| | || || |||||||||| ||||| | ||| | | || Sbjct 41706355 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAA 41706296 Query 84342 GAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACT 84401 ||||| || | ||||||||||| || |||||| | || |||||||||||||| || Sbjct 41706295 GAAGTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 41706236 Query 84402 CCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAG 84461 || ||||||||||| ||||||||||| || ||||| || ||||| || |||| ||| | Sbjct 41706235 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 41706176 Query 84462 TTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGA 84521 ||||| || ||| | || || || ||||| ||||| || || || || || | |||| Sbjct 41706175 TTGAAAGTACCTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGA 41706116 Query 84522 TACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCAT 84581 || | || ||| ||||||| || |||||||| ||||| || || |||||| ||| | Sbjct 41706115 TAGATAAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAA 41706056 Query 84582 GGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAA-TGCACC 84640 ||||||||||| | |||| | ||||||||| ||||| |||||||| |||| | |||| Sbjct 41706055 GGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTACACC 41705997 Query 84641 AATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCAT 84700 || | |||||| | |||| |||| |||||| | || ||||||| |||||| || || Sbjct 41705996 AAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAAT 41705937 Query 84701 ACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTAC 84760 | ||| ||||||||||||||||| || || | ||| ||||| ||| | |||| | Sbjct 41705936 AGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAAGTAGGAATAAT 41705877 Query 84761 GGCACCAGAA 84770 |||||||||| Sbjct 41705876 GGCACCAGAA 41705867 >seq11 Length=34766867 Score = 399 bits (442), Expect = 2e-106 Identities = 435/575 (76%), Gaps = 2/575 (0%) Strand=Plus/Plus Query 84169 GCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGA 84228 |||||||||| ||||| || || | |||||||| ||||||||| ||||| ||||||| Sbjct 15042315 GCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGA 15042374 Query 84229 TAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGACCGA 84288 | | || || || || || |||||||| ||||||||||| ||||| || |||||||| | Sbjct 15042375 TCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAA 15042434 Query 84289 ACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAAGTGA 84348 | ||||||| | || || |||||||||| ||||| | ||| | | ||||||| | Sbjct 15042435 ATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTA 15042494 Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408 | | ||||||||||| ||| |||||| | || |||||||||||||| || || |||| Sbjct 15042495 CCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACA 15042554 Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACG 84468 ||||||| ||||||||||| || ||||| || ||||| || |||| ||| | ||||| | Sbjct 15042555 TGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAG 15042614 Query 84469 TTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAA 84528 | ||| | || | || ||||| ||||| || || || || || | |||||| | | Sbjct 15042615 TACCTAAAATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCA 15042674 Query 84529 GGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCA 84588 ||| ||||||| || |||||||| ||||| || || |||||| ||| | ||||||| Sbjct 15042675 AGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACGCA 15042734 Query 84589 TACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAA-ATGCACCAATCAGG 84647 | || | |||| | ||||||||| |||| ||||||| ||||| | |||||| | | Sbjct 15042735 TGCCCAAACGAAAACTAAGTTCCCACTCACACCCCATGT-AGCAAGCTACACCAAGTAAG 15042793 Query 84648 AAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCT 84707 ||||| | |||| |||| |||||| ||||| |||||| |||||| || | | ||| Sbjct 15042794 AAGTGTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATGCC 15042853 Query 84708 GCTTCCCAAATAGGATAGAAATGTAGACCAATAGC 84742 ||||||||||||||||| || || | ||| ||||| Sbjct 15042854 GCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 15042888 >seq2 Length=48577505 Score = 158 bits (174), Expect = 1e-33 Identities = 192/262 (73%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 84279 TCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGA 84338 |||||||| || ||||||| | || || |||||||||| ||||| | ||| | | Sbjct 24951259 TCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAA 24951318 Query 84339 GAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCA 84398 | |||| || | ||||||| ||| ||| |||||| | || |||||||||||||| Sbjct 24951319 CTAAAAGTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCT 24951378 Query 84399 ACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATG 84458 || || ||||||||||| ||||||||||| || ||||| | ||||| || |||| ||| Sbjct 24951379 ACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATA 24951438 Query 84459 TAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAA 84518 | ||||| || |||| || || || ||||| ||||| || || || || || | | Sbjct 24951439 AAATTGAAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATA 24951498 Query 84519 GGATACACAAGGAATACAGCAG 84540 ||||| | | ||| ||||||| Sbjct 24951499 GGATAGATCAAGAAAACAGCAG 24951520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571265095164280