Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq1190 554 1e-153 seq13 392 1e-104 seq14 311 3e-80 seq11 302 1e-77 seq2 129 2e-25 >seq1190 Length=152218 Score = 554 bits (614), Expect = 1e-153 Identities = 719/989 (73%), Gaps = 6/989 (1%) Strand=Plus/Plus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || |||||||| || ||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct 343 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 402 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || || ||||| | | ||| ||||| || || | | ||| | ||||| || Sbjct 403 TTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACG 462 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || || || | || |||||||||||| ||| || | || |||| Sbjct 463 GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTA 522 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || || ||||||| ||| | ||||||||||||| ||| |||||| Sbjct 523 AACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTG 582 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| Sbjct 583 AAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAG 642 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 |||||||||||||| || ||| | || || | || ||| | | || ||||| Sbjct 643 GTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 702 Query 5552 CGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAAT 5611 | || | |||||| || | |||||||||||| ||| | | || |||||| Sbjct 703 CTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 762 Query 5612 ACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAAT 5671 || ||||| ||||| | |||||| || ||||||||||| ||||| || || ||||| ||| Sbjct 763 ACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAAT 822 Query 5672 ACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTTC 5729 || | |||||| || |||||||| || || || ||||||||||||| |||||| |||| Sbjct 823 ACAATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCAT--CTGAAAAGCTTC 880 Query 5730 CCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATAT 5788 |||| || | ||| || | || || || | |||| || || ||||| || ||||||||| Sbjct 881 CCTGACCAATAGGATAGATCAAGAAAACAGCAGTA-GCGGCTGCAACAGGAGCTGAATAT 939 Query 5789 GCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAG 5848 || || |||||| || ||||| || || | ||||||||||||| | || |||| | Sbjct 940 GCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATG 999 Query 5849 TAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAA 5908 || || | ||||| | |||||| | || | |||| || || || || ||||| Sbjct 1000 TAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTAT 1059 Query 5909 AGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTG 5968 | ||||||||| | | || |||||||| || ||||| ||||| || || || || Sbjct 1060 AACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCA 1119 Query 5969 GAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACG 6028 || | || | || ||| || || ||||| ||||||||||| ||||||||||| | || Sbjct 1120 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 1179 Query 6029 GGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGCA 6088 || ||||| || || || || || ||||| || ||||| | || || | |||||| || Sbjct 1180 GGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACA 1239 Query 6089 GTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATAGAGGCGG 6148 | ||||||||| || | | || ||||| || ||||||||||| || | || || || Sbjct 1240 GAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGA 1299 Query 6149 TTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || | |||||| || | ||||| |||||| Sbjct 1300 TTTTCGGTGCTGGTTATCCAGTTACAGAA 1328 >seq13 Length=45874162 Score = 392 bits (434), Expect = 1e-104 Identities = 630/902 (70%), Gaps = 26/902 (3%) Strand=Plus/Minus Query 5192 GCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGG 5251 || |||||||| || ||||| || |||||||| ||||| ||||||||||||||||||||| Sbjct 7359078 GCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGG 7359019 Query 5252 TTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACT 5311 || || ||||| | | ||| ||||| || || | | ||| | ||||| || Sbjct 7359018 TTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACG 7358959 Query 5312 GACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTA 5371 || || ||||| || || || || | || |||||||||||| ||| || | || |||| Sbjct 7358958 GATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTA 7358899 Query 5372 AGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTA 5431 | ||| || | || | ||||||| ||| | ||||||||||||| ||| |||||| Sbjct 7358898 AACCAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTG 7358839 Query 5432 AAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATAC 5491 || || ||||| |||||||| | || ||||| || |||||||| | ||||| ||||| Sbjct 7358838 AAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAG 7358779 Query 5492 GTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCA 5551 ||||| |||||||| || ||| | || || | || ||| | | || ||||| Sbjct 7358778 GTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCC 7358719 Query 5552 C-GAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAA 5610 | || | | || | || |||| | ||||||||||| || || | || ||||| Sbjct 7358718 CTGATCAAACTAAAAGTTACCAAGGAAT-CATGCATAGCACTAAATAAGGAGCCGCCGAA 7358660 Query 5611 TACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAA 5670 ||| ||||| ||| | | |||||| || ||||||||||| ||||| || | ||||| || Sbjct 7358659 TACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAA 7358600 Query 5671 TACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTT 5728 ||| | |||||| || ||||||| || || || ||||||||||||| |||||| ||| Sbjct 7358599 TACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCAT--CTGAAAAGCTT 7358542 Query 5729 CCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATA 5787 ||||| || | ||| || | || || || | |||| ||||| Sbjct 7358541 CCCTGACCAATAGGATAGATCAAGAAAACAGCAGTA----GCGGC--------------- 7358501 Query 5788 TGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAA 5847 ||| || ||| || || ||||| || || | ||||||||||||| | || |||| Sbjct 7358500 TGCAACAGCAATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCAT 7358441 Query 5848 GTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTA 5907 ||| || | ||||| | |||||| | | | |||| || || || || || || Sbjct 7358440 GTAGCAAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATA 7358381 Query 5908 AAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGCGTT 5967 | ||||||||| | | || |||||||| || ||||| ||||| || || || || Sbjct 7358380 TAACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGC 7358321 Query 5968 GGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCCTGCGAC 6027 || | || | || ||| || || ||||| ||||||||||| ||||||||||| | || Sbjct 7358320 AGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAAC 7358261 Query 6028 GGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATATAAATGC 6087 || ||||| || || || || || ||| | || ||||| | || | | |||||| | Sbjct 7358260 AGGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGATAAATAC 7358201 Query 6088 AG 6089 || Sbjct 7358200 AG 7358199 >seq14 Length=49042192 Score = 311 bits (344), Expect = 3e-80 Identities = 422/584 (72%), Gaps = 6/584 (1%) Strand=Plus/Minus Query 5384 ACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATAC 5443 || || ||||||| ||| | ||||||||||||| ||| | |||||| || || ||||| Sbjct 41706475 ACTACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATAT 41706416 Query 5444 TGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCT 5503 |||||||| | || ||||| || |||||||| || ||||| ||||| |||||||||||| Sbjct 41706415 TGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCT 41706356 Query 5504 TGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAA 5563 || || ||| | || || | || ||| | | || ||||| | || | || Sbjct 41706355 TGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAA 41706296 Query 5564 GAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACA 5623 ||||| || | ||||||||| || ||| | | || |||||||| ||||| ||| Sbjct 41706295 GAAGTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTACA 41706236 Query 5624 CCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAG 5683 || | |||||| || ||||||||||| ||||| || || ||||| ||||| | |||||| Sbjct 41706235 CCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAA 41706176 Query 5684 TTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAG 5741 || |||||||| | || || |||||||||||||| ||||| |||||||| || | || Sbjct 41706175 TTGAAAGTACCTAAAATTCCTAGAGGCATACCATC--TGAAAAGCTTCCCTGACCAATAG 41706118 Query 5742 GGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATC 5800 | || | || || || | ||||| | || ||||| || ||||||||||| || |||| Sbjct 41706117 GATAGATAAAGAAAACAGCAGTAG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATC 41706059 Query 5801 CATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATA 5860 | || ||||| || || | ||||||||||||| | || |||| ||| || | | Sbjct 41706058 GAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACA 41705999 Query 5861 CCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCG 5920 |||| | |||||| | || | |||| || || | || || || | ||||||||| Sbjct 41705998 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCA 41705939 Query 5921 AGATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 | | || |||||||| || ||||| ||||| || || || || Sbjct 41705938 ATAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 41705895 >seq11 Length=34766867 Score = 302 bits (334), Expect = 1e-77 Identities = 416/577 (72%), Gaps = 6/577 (1%) Strand=Plus/Plus Query 5391 GCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGA 5450 |||||| ||| | ||||||||||||| ||| | |||||| || || ||||| ||||||| Sbjct 15042315 GCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGA 15042374 Query 5451 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGA 5510 | | || ||||| || |||||||| || ||||| ||||| |||||||||||||| || | Sbjct 15042375 TCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAA 15042434 Query 5511 ATTTATATCCATAGTTCTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAA 5570 || | || || | || ||| | | || ||||| | || | ||||||| | Sbjct 15042435 ATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTA 15042494 Query 5571 CAAGACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCA 5630 | | |||||||||||| ||| | | || |||||||| ||||| ||||| | || Sbjct 15042495 CCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACA 15042554 Query 5631 TGTGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAG 5690 |||| || ||||||||||| ||||| || || ||||| ||||| | |||||| || |||| Sbjct 15042555 TGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAG 15042614 Query 5691 TACCAGAGATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAGGGTATAC 5748 |||| | || | ||||||||||||| |||||| |||||||| || | ||| || | Sbjct 15042615 TACCTAAAATTCTTAGAGGCATACCAT--CTGAAAAGCTTCCCTGACCAATAGGATAGAT 15042672 Query 5749 TAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTC 5807 || || || | |||| || || ||||| || ||||||||||| || |||| | || | Sbjct 15042673 CAAGAAAACAGCAGTA-GCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGAC 15042731 Query 5808 GCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAA 5867 |||| || || | ||||||||||||| | | |||| ||| || | ||||| | Sbjct 15042732 GCATGCCCAAACGAAAACTAAGTTCCCACTCACACCCCATGTAGCAAGCTACACCAAGTA 15042791 Query 5868 GGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGG 5927 |||||| | || | |||| || || || || | || | ||||||||| | | | Sbjct 15042792 AGAAGTGTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATG 15042851 Query 5928 CTGCTTCCCAGATGGGATAGAAGTGTAACCCAATTGC 5964 | |||||||| || ||||| ||||| || || || || Sbjct 15042852 CCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 15042888 >seq2 Length=48577505 Score = 129 bits (142), Expect = 2e-25 Identities = 144/189 (76%), Gaps = 5/189 (3%) Strand=Plus/Plus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||| ||||||| ||| | | || |||||||| ||||| ||||| | |||||| || Sbjct 24951337 CCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAAT 24951396 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 ||||||||||| ||||| || | ||||| ||||| | |||||| || |||||| | || Sbjct 24951397 GGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAA 24951456 Query 5699 ATACCAAGAGGCATACCATCACTGAAA--CTTCCCTGTCCGAAAGGGTATACTAAAAATA 5756 || || ||||||||||||| |||||| |||||||| || | ||| || | || || | Sbjct 24951457 ATTCCTAGAGGCATACCAT--CTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAA 24951514 Query 5757 CTG-AGTAG 5764 | | ||||| Sbjct 24951515 CAGCAGTAG 24951523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647441057626