Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq1190 531 2e-146 seq13 423 6e-114 seq11 338 2e-88 seq14 336 7e-88 seq2 154 4e-33 >seq1190 Length=152218 Score = 531 bits (588), Expect = 2e-146 Identities = 710/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| || |||||||| || || || ||||| |||||||| |||||||| || | || Sbjct 346 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 405 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 406 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 465 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| || || | |||||||| | Sbjct 466 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCGGTAAAC 525 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | || ||||||||||| | ||||||||||||| ||| ||| || || Sbjct 526 CAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 585 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| || ||||| ||||| || Sbjct 586 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTT 645 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 ||||| ||||| || ||| | || || | || ||||||| | || ||||| | Sbjct 646 TCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 705 Query 25813 ATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACC 25872 || | ||||| || | || ||||||||| ||||| | || |||||||| Sbjct 706 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACA 765 Query 25873 CCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACA 25932 || || ||||| | ||| || || ||||||||||| ||||| || || |||||||| ||| Sbjct 766 CCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACA 825 Query 25933 AACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGT 25992 | ||||||||||||||| |||||||| || |||||||||||||| || || || || || Sbjct 826 ATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGA 885 Query 25993 CCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACA 26052 |||| ||| |||| ||||| |||||| || ||||||||||| |||||||| || ||| Sbjct 886 CCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACA 945 Query 26053 CATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAA 26109 ||||| || | ||| || | | | ||||||||||||| | || |||| || || Sbjct 946 GCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAA 1005 Query 26110 GCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAAC 26169 ||| | || | | ||||| | ||||| |||| ||| || || ||||| || ||| Sbjct 1006 GCT---ACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 1062 Query 26170 CACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGAT 26229 || || || | | ||| |||||||| || || || ||||| | ||| || || ||| Sbjct 1063 CATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAA 1122 Query 26230 GACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGC 26289 | || | || || || || ||||| ||||||||||| |||| | ||| || |||||| Sbjct 1123 GTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 1182 Query 26290 TCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTC 26349 |||||||||||||| ||||| || ||||| ||||||| ||| || || | |||| | | Sbjct 1183 TCACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGAA 1242 Query 26350 ACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTG 26409 ||| || || | | ||| ||||| | || |||||||| || | || || || || Sbjct 1243 GTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATTT 1302 Query 26410 TTTGTACTTGTAACCCAGTCACATAA 26435 | || || || | ||||| ||| || Sbjct 1303 TCGGTGCTGGTTATCCAGTTACAGAA 1328 >seq13 Length=45874162 Score = 423 bits (468), Expect = 6e-114 Identities = 634/897 (71%), Gaps = 30/897 (3%) Strand=Plus/Minus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| || |||||||| || || || ||||| |||||||| |||||||| || | || Sbjct 7359075 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 7359016 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 || ||||||| ||| |||||||| || | || | || | |||||| || || Sbjct 7359015 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 7358956 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGC 25632 || ||||| || || || || | || |||||||||||| || || | |||||||| | Sbjct 7358955 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCGGTAAAC 7358896 Query 25633 CATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAG 25692 || || | | ||||||||||| | ||||||||||||| ||| ||| || || Sbjct 7358895 CAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 7358836 Query 25693 CTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTC 25752 || ||||| |||||||| | || ||||| || |||||||| | ||||| ||||| || Sbjct 7358835 CTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAGGTT 7358776 Query 25753 TCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGA 25812 || || ||||| || ||| | || || | || ||||||| | || ||||| | Sbjct 7358775 TCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 7358716 Query 25813 AT--AAGTGAGGAAGTAAC-AAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAAT 25869 || || | | |||| || ||| || ||||||||| ||||| | || |||||| Sbjct 7358715 ATCAAACTAA--AAGTTACCAAGGAATCA-TGCATAGCACTAAATAAGGAGCCGCCGAAT 7358659 Query 25870 ACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAG 25929 || || || ||| | | ||| || || ||||||||||| ||||| || | |||||||| Sbjct 7358658 ACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAAT 7358599 Query 25930 ACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCT 25989 |||| |||||||||| |||| |||||||| || |||||||||||||| || || || || Sbjct 7358598 ACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCC 7358539 Query 25990 TGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCT 26049 || |||| ||| |||| ||||| |||||| || |||||||||| Sbjct 7358538 TGACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAG-------------- 7358493 Query 26050 ACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AG 26106 || || || || | ||| || | | | ||||||||||||| | || |||| || Sbjct 7358492 -CA---ATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAG 7358437 Query 26107 TAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATAC 26166 ||||| | || | | ||||| | | ||| |||| ||| || || |||||||| Sbjct 7358436 CAAGCT---ACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGCCGTTATAT 7358380 Query 26167 AACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTA 26226 ||||| || || | | ||| |||||||| || || || ||||| | ||| || || | Sbjct 7358379 AACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCA 7358320 Query 26227 GATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACA 26286 || | || | || || || || ||||| ||||||||||| |||| | ||| || ||| Sbjct 7358319 GAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACA 7358260 Query 26287 GGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAAT 26343 ||||||||||||||||| ||||| || |||| ||||||| ||| | || | |||| Sbjct 7358259 GGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGATAAAT 7358203 >seq11 Length=34766867 Score = 338 bits (374), Expect = 2e-88 Identities = 422/577 (73%), Gaps = 6/577 (1%) Strand=Plus/Plus Query 25649 GCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGGAAGA 25708 |||||||||| | ||||||||||||| ||| | ||| || || || ||||| ||||||| Sbjct 15042315 GCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGA 15042374 Query 25709 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGA 25768 | | || ||||| || |||||||| || ||||| ||||| || ||||| ||||| || | Sbjct 15042375 TCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAA 15042434 Query 25769 ATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAA 25828 || | || || | || ||||||| | || ||||| | || | | ||||| | Sbjct 15042435 ATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTA 15042494 Query 25829 CAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCA 25888 | | || ||||||||| ||||| | || |||||||| || || ||||| | || Sbjct 15042495 CCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACA 15042554 Query 25889 TATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAG 25948 | || || ||||||||||| ||||| || || |||||||| |||| |||||||||||||| Sbjct 15042555 TGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAG 15042614 Query 25949 TCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTA 26008 | ||| |||| | |||||||||||||| || || || || || |||| ||| |||| | Sbjct 15042615 TACCTAAAATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCA 15042674 Query 26009 AGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCA 26068 |||| |||||| || ||||||||||| |||||||| || ||| ||| | || | || Sbjct 15042675 AGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACGCA 15042734 Query 26069 TGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCGATGA 26125 |||| | | | ||||||||||||| | | |||| || ||||| | || | | Sbjct 15042735 TGCCCAAACGAAAACTAAGTTCCCACTCACACCCCATGTAGCAAGCT---ACACCAAGTA 15042791 Query 26126 GAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTG 26185 ||||| | ||||| |||| ||| || |||||| |||| ||||| || || | | || Sbjct 15042792 AGAAGTGTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATG 15042851 Query 26186 CAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 | |||||||| || || || ||||| | ||| || || Sbjct 15042852 CCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 15042888 >seq14 Length=49042192 Score = 336 bits (372), Expect = 7e-88 Identities = 424/581 (73%), Gaps = 6/581 (1%) Strand=Plus/Minus Query 25645 ACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGCATACTGG 25704 || ||||||||||| | ||||||||||||| ||| | ||| || || || ||||| ||| Sbjct 41706472 ACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGG 41706413 Query 25705 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGG 25764 ||||| | || ||||| || |||||||| || ||||| ||||| || ||||| ||||| Sbjct 41706412 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 41706353 Query 25765 CCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAA 25824 || ||| | || || | || ||||||| | || ||||| | || | | ||| Sbjct 41706352 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAA 41706293 Query 25825 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 25884 || || | || |||||| || ||||| | || |||||||| || || ||||| Sbjct 41706292 GTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 41706233 Query 25885 AGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTG 25944 | ||| || || ||||||||||| ||||| || || |||||||| |||| |||||||||| Sbjct 41706232 AACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTG 41706173 Query 25945 AAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAG 26004 ||||| ||| |||| || |||||||||||||| || || || || || |||| ||| ||| Sbjct 41706172 AAAGTACCTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 41706113 Query 26005 ACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGC 26064 | ||||| |||||| || ||||||||||| |||||||| || ||| ||| | || Sbjct 41706112 ATAAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGA 41706053 Query 26065 CTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCA---AGTAAGCTGAGATGCCG 26121 | ||| || | | | ||||||||||||| | || |||| || ||||| | || Sbjct 41706052 CGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCT---ACACCA 41705996 Query 26122 ATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGG 26181 | | ||||| | ||||| |||| ||| || | |||||||| ||||| || || | Sbjct 41705995 AGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATA 41705936 Query 26182 GTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 26222 | ||| |||||||| || || || ||||| | ||| || || Sbjct 41705935 GATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 41705895 >seq2 Length=48577505 Score = 154 bits (170), Expect = 4e-33 Identities = 141/178 (79%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 25842 CATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATG 25901 ||||||| ||||| | || |||||||| || || ||||| | ||| || || ||||| Sbjct 24951342 CATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATG 24951401 Query 25902 CATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACC 25961 |||||| ||||| || | |||||||| |||| ||||||||||||||| ||||||| || Sbjct 24951402 CATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCC 24951461 Query 25962 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCA 26019 |||||||||||||| || || || || || |||| ||| |||| ||||| |||||| Sbjct 24951462 TAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAAACAGCA 24951519 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991450335516