Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq1190 540 1e-148 seq13 448 5e-121 seq14 318 6e-82 seq11 316 2e-81 seq2 123 3e-23 >seq1190 Length=152218 Score = 540 bits (598), Expect = 1e-148 Identities = 712/986 (72%), Gaps = 6/986 (1%) Strand=Plus/Minus Query 162502 TGTAACTGGGTCACCTCAGTTGACAATCGCATCTATGTCGGTTGGTTCGGTGTCTTGATG 162561 ||||||||| | ||| || ||||| | || | || ||||| ||||| |||||| Sbjct 1325 TGTAACTGGATAACCAGCACCGAAAATCGTCTTTACATTGGATGGTTTGGTGTTTTGATG 1266 Query 162562 ATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCATTCATTGCAGCACCTCCA 162621 || ||| || | | ||| | || || || || || || ||||| || |||||| Sbjct 1265 ATTCCTACTTTATTGACCGCAACTTCTGTATTTATTATCGCTTTTATTGCTGCCCCTCCA 1206 Query 162622 GTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTTCTCTATGGTAACAACATC 162681 || ||||| |||||||| | || |||||| | || || || || ||||| ||||| ||| Sbjct 1205 GTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATCTCTACTTTATGGAAACAATATC 1146 Query 162682 ATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGG 162741 || |||||||| | |||||| ||| ||||| ||| | ||||| |||||||| ||| Sbjct 1145 ATTTCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGG 1086 Query 162742 GAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTC 162801 ||||| ||| || ||||||| ||||| || || || || |||| |||| | || | Sbjct 1085 GAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAACTAATTGTTCTA 1026 Query 162802 CACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTA 162861 |||||| | | || | | ||| || ||| ||||||||||| || || || Sbjct 1025 CACTTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTG 966 Query 162862 GGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTG 162921 ||||||||||||||||| ||||||||| || || || || | || || ||||| Sbjct 965 GGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTT 906 Query 162922 TTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCT 162981 |||||| |||||||| | ||||| || || || || | |||||||| || ||||| Sbjct 905 TTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTCA 846 Query 162982 GGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTC 163041 |||||||| || | ||| | || || || || ||||| || || || ||||| || || Sbjct 845 GGTACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTT 786 Query 163042 CATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCT 163101 || ||| | || || || ||||||||||| || || || || ||||||||||| ||||| Sbjct 785 CACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCC 726 Query 163102 CTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTAT 163161 | || |||||| | | ||||| ||||| || || | || || || | ||||| Sbjct 725 TTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTAC 666 Query 163162 AAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGC 163221 | || || ||||| ||||| || || || ||||| ||||||||||| || ||||| || Sbjct 665 AGATTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGA 606 Query 163222 TTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCA 163281 ||||||||||| |||||| ||||||||| || ||||| | || |||||| | ||||| Sbjct 605 TTGATCTTCCAATATGCAAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCTGCT 546 Query 163282 TTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTT 163341 | ||||| || | || ||||| || || | ||| | |||||||| |||||| | Sbjct 545 TGGCCTGTAGTAGGTATTTGGTTTACCGCTTTAGGTATCAGCACTATGGCTTTCAACTTA 486 Query 163342 AACGGTTTCAACTTCAACCAATCCGTCGTTGA---CGCAGGTGGTAAAGTGATTCCTACT 163398 || |||||||| |||||||||||||| ||||| |||| || || ||| ||| Sbjct 485 AATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGTCGT---GTAATTAATACC 429 Query 163399 TGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCT 163458 ||||| ||||| ||||| |||| |||||||||||||| ||||| || ||||||||| Sbjct 428 TGGGCTGATATTATTAACCGAGCTAACCTTGGTATGGAAGTAATGCATGAACGTAATGCT 369 Query 163459 CACAACTTCCCACTTGACCTTGCTGC 163484 || || ||||| || || || ||||| Sbjct 368 CATAATTTCCCTCTAGATCTAGCTGC 343 >seq13 Length=45874162 Score = 448 bits (496), Expect = 5e-121 Identities = 635/896 (71%), Gaps = 24/896 (3%) Strand=Plus/Plus Query 162592 TTCATCATTGCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTT 162651 || ||||| | || ||||| || |||| ||| ||||| |||||||| | || |||||| Sbjct 7358204 TTTATCATCACTTTTATTGCTGCCCCTCTAGTAGATATTGATGGTATTCGTGAGCCTGTT 7358263 Query 162652 GCAGGTTCACTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAAT 162711 | || || || || ||||| ||||| ||||| |||||||| | |||||| ||| Sbjct 7358264 TCTGGATCTCTACTTTATGGAAACAATATCATTTCTGGTGCCATTATTCCTACTTCTGCG 7358323 Query 162712 GCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTAT 162771 ||||| ||| | ||||| |||||||| |||||||| ||| || ||||||| ||||| ||| Sbjct 7358324 GCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTGATGAATGGTTATAT 7358383 Query 162772 AATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT 162831 || || || |||| |||| | | | |||||| | | || | | ||| Sbjct 7358384 AACGGCGGTCCTTATGAACTAATTATTCTACACTTCTTACTTGGTGTAGCTTGCTACATG 7358443 Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 || ||| ||||||||||| || || || |||||||||||||| || ||||||| | Sbjct 7358444 GGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGTATGCGTCCTTGAATTGCTGTTGCAGCC 7358503 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || | ||||| |||||| |||||||| | ||||| || Sbjct 7358504 GCTACT------------------GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGC 7358545 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || || || | |||||||| || ||||| ||||||| || | ||| | || || || Sbjct 7358546 TTTTCAGATGGTATGCCTCTAGGAATTTCAGGTACTTCCAATTTTATGATTGTATTTCAG 7358605 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || |||| || || || ||||| || || || ||| | | || || ||||||||||| Sbjct 7358606 GCTAAGCATAATATTCTTATGCATCCATTTCACATGTTGGTTGTAGCTGGTGTATTCGGC 7358665 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACT 163131 || || | |||||||||||||| | ||| | || |||| | | | ||||| ||||| Sbjct 7358666 GGCTCCTTATTTAGTGCTATGCATGATTCCTTGGTAACTTTTAGTTTGATCAGGGAAACC 7358725 Query 163132 ACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAAC 163191 || || | || || || | ||||| | || || ||||| || || || || || Sbjct 7358726 ACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAGGAGGAAACCTATAAT 7358785 Query 163192 ATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAAC 163251 ||||| | ||||||||| || ||||| || ||||||||||| |||||| ||||||||| Sbjct 7358786 ATTGTAGTTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCAAGTTTCAACAAT 7358845 Query 163252 TCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCA 163311 || ||||| | || |||||| ||||||| | ||| | || | || ||||| || || Sbjct 7358846 TCTCGTTCTTTACATTTCTTCTTTGCTGCTTGGCCTATAGTAGGTATTTGGTTTACCGCT 7358905 Query 163312 ATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTT 163371 | ||| | |||||||| |||||| | || |||||||| |||||||||||||| ||| Sbjct 7358906 TTAGGTATCAACACTATGGCTTTCAACTTAAATGGTTTCAATTTCAACCAATCCGTAGTT 7358965 Query 163372 GA---CGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTT 163428 || |||| || || ||| ||| ||||| ||||| ||||| |||| ||| Sbjct 7358966 GATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAACCGAGCTAACCTT 7359022 Query 163429 GGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGC 163484 ||||||||||| ||||| || ||||||||||| || ||||| || || || ||||| Sbjct 7359023 GGTATGGAAGTAATGCATGAACGTAATGCTCATAATTTCCCTCTAGATCTAGCTGC 7359078 >seq14 Length=49042192 Score = 318 bits (352), Expect = 6e-82 Identities = 428/596 (72%), Gaps = 0/596 (0%) Strand=Plus/Plus Query 162685 TCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAA 162744 |||||||| | |||||| ||| ||||| ||| | ||||| |||||||| |||||| Sbjct 41705868 TCTGGTGCCATTATTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAA 41705927 Query 162745 GCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCAC 162804 || ||| || ||||||| ||||| ||||| || | |||| |||| | || | ||| Sbjct 41705928 GCGGCATCTATTGATGAATGGTTATATAACGGCGATCCTTATGAACTAATTGTTCTACAC 41705987 Query 162805 TTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGT 162864 ||| | | || | | ||| || ||| ||||||||||| || || || ||| Sbjct 41705988 TTCTTACTTGGTGTAGCTTGCTACATGGGGCGTGAGTGGGAACTTAGTTTTCGTTTGGGT 41706047 Query 162865 ATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTC 162924 |||||||||| ||| ||||||||| || || || || | || || ||||| ||| Sbjct 41706048 ATGCGTCCTTCGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTC 41706107 Query 162925 TTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGT 162984 || |||||||| | ||||| || || || || | |||||||| || |||| ||| Sbjct 41706108 TTTATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATTTTAGGT 41706167 Query 162985 ACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCAT 163044 ||||| || | ||| | || || || || ||||| || || || ||||| || || || Sbjct 41706168 ACTTTCAATTTTATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCAC 41706227 Query 163045 ATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTT 163104 ||| | || || || ||||||||||| || || || || |||| |||||| ||||| | Sbjct 41706228 ATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGATATGCATGGTTCCTTG 41706287 Query 163105 GTTACTTCTTCTCTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAG 163164 || ||||||| | | ||||| ||||| || || | || || || | ||||| | Sbjct 41706288 GTAACTTCTTGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGA 41706347 Query 163165 TTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTG 163224 || || ||||| ||||| || || || ||||| ||||||||||| || ||||| || ||| Sbjct 41706348 TTTGGTCAAGAGGAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTG 41706407 Query 163225 ATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC 163280 |||||||| |||||| ||||||||| | ||||| | || |||||| | ||||| Sbjct 41706408 ATCTTCCAATATGCAAGTTTCAACAATTGTCGTTCTTTACATTTCTTCTTAGCTGC 41706463 >seq11 Length=34766867 Score = 316 bits (350), Expect = 2e-81 Identities = 422/584 (72%), Gaps = 2/584 (0%) Strand=Plus/Minus Query 162698 TTCCTAGTTCAAATGCTATTGGTCTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTG 162757 |||||| ||| ||||| ||| | ||||| |||||||| |||||||| ||| || ||| Sbjct 15042902 TTCCTACTTCTGCGGCTATAGGTTTGCACTTTTATCCTATTTGGGAAGCGGCATCTGTTG 15042843 Query 162758 ATGAGTGGTTGTATAATGGTGGACCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAA 162817 |||| ||||| |||| ||||| |||| |||| | || | |||||| | | || Sbjct 15042842 ATGAATGGTTATATAGCGGTGGTCCTTATGAACTAATTGTTCTACACTTCTTACTTGGTG 15042783 Query 162818 TCACAGCATAC-TGTGGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGG 162876 | | ||| || ||| || ||||||||||| || || || || |||||||||| | Sbjct 15042782 TAGCTTGCTACATGGGGT-GTGAGTGGGAACTTAGTTTTCGTTTGGGCATGCGTCCTTCG 15042724 Query 162877 ATCTGTGTTGCATACTCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCT 162936 || ||||||||| || || || || | || || ||||| |||||| |||||||| Sbjct 15042723 ATTGCTGTTGCATATTCAGCTCCTGTTGCAGCCGCTACTGCTGTTTTCTTGATCTATCCT 15042664 Query 162937 TTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTAC 162996 | ||||| || || || || | |||||||| | |||| |||||||| || | Sbjct 15042663 ATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAAGAATTTTAGGTACTTTCAATTTT 15042604 Query 162997 ATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTC 163056 ||| | || || || || ||||| || || || ||||| || || || ||| | || || Sbjct 15042603 ATGATTGTATTTCAGGCTGAGCATAATATTCTTATGCATCCATTTCACATGTTAGGTGTA 15042544 Query 163057 GCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCT 163116 || ||||||||||| || || || || ||||||||||| ||||| | || ||||||| | Sbjct 15042543 GCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACTTCTTGT 15042484 Query 163117 CTTATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAA 163176 | ||||| ||||| || || | || || || | ||||| | || || ||||| Sbjct 15042483 TTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTTGGTCAAGAG 15042424 Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||| || || || ||||| ||||||||||| || ||||| || ||||||||||| ||| Sbjct 15042423 GAAGAAACCTATAATATTGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATAT 15042364 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGC 163280 ||| ||||||||| | ||||| | || |||||| | ||||| Sbjct 15042363 GCAAGTTTCAACAATTGTCGTTCTTTACATTTCTTCTTAGCTGC 15042320 >seq2 Length=48577505 Score = 123 bits (136), Expect = 3e-23 Identities = 160/221 (72%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 162916 GCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTGACGCAATGCCTCTTGGT 162975 ||||| |||||| |||||||| | ||||| || || || || | |||||||| || Sbjct 24951518 GCTGTTTTCTTGATCTATCCTATTGGTCAGGGAAGCTTTTCAGATGGTATGCCTCTAGGA 24951459 Query 162976 ATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGCACAACATCCTAATGCAC 163035 ||||| | |||||| || | ||| | || || || || |||| || || || ||||| Sbjct 24951458 ATTTCAGATACTTTCAATTTTATGATTGTATTTCAGGCTAAGCATAATATTCTTATGCAT 24951399 Query 163036 CCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCACTCTTTAGTGCTATGCAC 163095 || || || ||| | || || || ||||||||||| || || || || ||||||||| | Sbjct 24951398 CCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTATTCAGTGCTATGTAT 24951339 Query 163096 GGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGA 163136 ||||| | || |||| | | | ||||| ||||| || || Sbjct 24951338 GGTTCCTTGGTAACTTTTAGTTTGATCAGGGAAACCACAGA 24951298 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 553076565950040