Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq13 93.3 4e-14 seq7 93.3 4e-14 seq17 89.7 4e-13 >seq13 Length=45874162 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || ||||| ||| || |||| | || Sbjct 23088173 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 23088114 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | ||| |||||| Sbjct 23088113 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCCCCAGATCAG 23088054 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| || |||||| | || ||| | ||| | || ||||| ||| Sbjct 23088053 CAGAGGCTGATTTTTGCCGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 23087994 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 23087993 ATTCAGAAGGAATCCACCCTTCACTTGGT 23087965 Score = 89.7 bits (98), Expect = 4e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || ||||| || || || || ||||| ||| || ||| |||| Sbjct 23087945 ATGCAGATTTTCGTTAAAACTTTGACCGGAAAGACCATAACCTTGGAGGTGGAGAGTTCA 23087886 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || ||||| || || | || ||| || Sbjct 23087885 GATACCATAGACAATGTGAAAGCTAAGATTCAG-GACAAGGAAGGTATCCCACCAGACCA 23087827 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| ||||||||||| || ||||| | |||||| | ||| | || || ||||| Sbjct 23087826 ACAGAGGCTTATCTTTGCCGGGAAACAGCTTGAAGATGGAAGAACCCTTGCTGACTATAA 23087767 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATT 28765 ||| || || |||||||| |||||| |||| || Sbjct 23087766 CATCCAGAAGGAATCTACCCTGCACTTGGTGTT 23087734 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || || ||||| ||| || |||| | || Sbjct 23083705 ATGCAAATCTTTGTCAAGACTTTGACCGGGAAGACCATCACCCTTGAGGTGGAATCCTCG 23083646 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | || | ||| || ||| ||||||||||| | || |||||| Sbjct 23083645 GACACCATTGATAATGTTAAGGCCAAGATCCAGGACAAAGAGGGCATCCCTCCAGATCAG 23083586 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || || || || |||||| | || ||| | ||| | || ||||| ||| Sbjct 23083585 CAGAGGCTGATTTTCGCTGGTAAACAACTTGAGGATGGAAGAACCCTTGCTGATTACAAC 23083526 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 23083525 ATTCAGAAGGAATCCACCCTTCACTTGGT 23083497 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||||||||| || || | || || || ||| | ||| || |||| || Sbjct 23083021 ATGCAAATATTTGTGAAGACTCTGACAGGGAAGACCGTAACCTTGGAGGTGGAAAGCTCT 23082962 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||| | || ||||| ||||| | || |||||| Sbjct 23082961 GATACCATTGATAATGTGAAAGCAAAGATTCAG-GACAAGGAGGGTATTCCACCAGATCA 23082903 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||| ||||| || || |||||||||||| | || |||| ||||| || Sbjct 23082902 GCAGAGGCTTATTTTTGCTGGGAAGCAATTGGAAGATGGTCGTACCTTGGCGGATTACAA 23082843 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||||| || ||||| || ||||| Sbjct 23082842 TATTCAGAAGGAATCCACCCTGCA 23082819 Score = 82.4 bits (90), Expect = 6e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| ||||| |||||||| || || || || ||||| ||| || |||| | || Sbjct 23088401 ATGCAGATATTCGTAAAAACTTTGACCGGCAAGACCATCACCCTTGAGGTGGAATCCTCC 23088342 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | | | || || || | || ||||| || || | || || || Sbjct 23088341 GACACCATTGACAACGTAAAAGCTAAGATTCAA-GACAAGGAAGGGATCCCACCTGACCA 23088283 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||||||||||||||||| |||||| | || ||| | || | |||||||| || Sbjct 23088282 GCAGAGACTTATCTTTGCGGGTAAACAACTTGAGGATGGTCGCACCCTTGCCGATTACAA 23088223 Query 28733 CATTCAAAAAGAATCTACTCTGCA 28756 ||| ||||| ||||| || || || Sbjct 23088222 CATCCAAAAGGAATCAACCCTCCA 23088199 >seq7 Length=44630203 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || |||||||| || || ||| Sbjct 36855816 ATGCAAATCTTTGTGAAGACCCTTACTGGGAAGACCATTACTTTGGAGGTAGAGAGCTCA 36855875 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | || | ||| ||| ||| ||||| ||||| | || ||| ||| Sbjct 36855876 GACACAATTGACAATGTGAAGGCAAAGATCCAAGACAAGGAGGGTATCCCACCAGACCAA 36855935 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| || || ||||| |||||||| | |||||| ||| |||| ||||| ||| Sbjct 36855936 CAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAAC 36855995 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 || |||||||||||||| || ||| |||| Sbjct 36855996 ATCCAAAAAGAATCTACCCTCCACTTGGT 36856024 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || | || || || ||||| ||| || ||| || Sbjct 36855588 ATGCAAATCTTTGTCAAGACTCTCACTGGAAAGACCATCACCCTTGAGGTGGAGAGCTCT 36855647 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || |||| || || | || |||||||| || | || ||| || Sbjct 36855648 GACACTATTGACAATGTCAAAGCCAAGATTCAG-GACAAAGAAGGTATCCCACCAGACCA 36855706 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 |||||| || || ||||| |||||||| | |||||| ||| |||| ||||| || Sbjct 36855707 ACAGAGGCTCATTTTTGCTGGCAAACAGCTTGAAGATGGCCGAACCTTGGCTGATTACAA 36855766 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| |||||||||||||| || ||| |||| Sbjct 36855767 CATCCAAAAAGAATCTACCCTCCACTTGGT 36855796 >seq17 Length=41641078 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 ||||| || || || || || || ||||| || ||||| ||| || ||| |||| Sbjct 3124700 ATGCAGATTTTCGTCAAGACTTTGACGGGAAAGACCATCACCTTGGAGGTGGAGAGTTCA 3124759 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | | || | || || || | || || || ||||| | ||| ||| || Sbjct 3124760 GATACCATAGACAATGTGAAAGCCAAGATTCAA-GATAAGGAGGGTATCCCCCCAGACCA 3124818 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| || ||||| | |||||| ||| | || |||||||| Sbjct 3124819 GCAGAGGCTTATCTTTGCTGGTAAACAGCTTGAAGATGGACGAACCCTTGCAGATTATAA 3124878 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGTATTAAG 28768 ||| || || |||||||| |||||| |||| || || Sbjct 3124879 CATCCAGAAGGAATCTACCCTGCACTTGGTTTTGAG 3124914 Score = 86.0 bits (94), Expect = 5e-12 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| || || || || || ||||| || || ||| ||| ||| Sbjct 3124928 ATGCAAATCTTTGTTAAGACTTTGACCGGAAAAACAATAACTTTAGAAGTTGAAAGTTCT 3124987 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || | | | | ||| ||| || ||||||||||| | || ||| || Sbjct 3124988 GATACCATCGATAACGTGAAGGCAAAGATACAGGACAAAGAGGGGATTCCACCAGACCAG 3125047 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| || || || |||||||| | ||| | || |||||||| Sbjct 3125048 CAGAGGCTTATCTTTGCTGGGAAGCAGCTGGAAGATGGTCGTACTCTTGCTGATTATAAT 3125107 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGTATTAAGATTACGAGGAGGGAT 28783 || || || || || |||||||| |||| || || | || ||||| || Sbjct 3125108 ATCCAGAAGGAGTCCACTCTGCATTTGGTGTTGAGGCTTCGTGGAGGTAT 3125157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425398625116389