Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq1190 558 1e-154 seq13 439 8e-119 seq14 325 1e-84 seq11 316 6e-82 seq2 122 3e-23 >seq1190 Length=152218 Score = 558 bits (618), Expect = 1e-154 Identities = 724/995 (73%), Gaps = 4/995 (0%) Strand=Plus/Plus Query 17825 GTTGATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAA 17884 || ||| | ||||| |||||| ||||| |||||||||||||| || ||||| ||||| | Sbjct 336 GTCGATCGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCAT 395 Query 17885 GCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGC 17944 ||||||||||||| ||| | | |||||||| ||| | || | ||| | | Sbjct 396 ACCAAGGTTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC 455 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 || | |||||||||||| ||||| ||||| | || |||||||||||| ||| || | Sbjct 456 AACTACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAA 515 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || ||||| ||| || | || ||||||||||| ||||||||||||| | | Sbjct 516 AGCGGTAAACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGA 575 Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 |||||| || || ||||| |||||||| | || ||||| || |||||||| || ||||| Sbjct 576 ATTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAAT 635 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || ||||| ||||| |||||| | || || | || ||| ||| || || Sbjct 636 ATTATAGGTTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 695 Query 18185 CGTTTCTCTAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCC 18244 ||||| || || | ||||| || | || ||||||||| ||||| | || Sbjct 696 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCC 755 Query 18245 ACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGC 18304 |||||||| || || ||||| | ||| || || ||||||||||| ||||| || || || Sbjct 756 GCCGAATACACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGC 815 Query 18305 TTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAA 18364 || ||||| | ||| |||||||||||||| ||| || |||||||||||||| || || Sbjct 816 CTGAAATACAATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAA 875 Query 18365 ACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCG 18422 || || || |||| |||||| | | ||||| || | || | || ||||| || || || Sbjct 876 GCTTCCCTGACCAATAGGATAGATCAAGAAA-ACAGCAGTA-GCGGCTGCAACAGGAGCT 933 Query 18423 GAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGT 18482 ||||| |||||| |||||| || |||||||| | | | ||||||||||||| | || Sbjct 934 GAATATGCAACAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGC 993 Query 18483 CCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCG 18542 |||||||| || | || | | ||||| | ||||| |||| ||| || || ||| Sbjct 994 CCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCG 1053 Query 18543 TTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATT 18602 || |||||||| || || | | ||| |||||||| || || || ||||| | ||| || Sbjct 1054 TTGTATAACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATA 1113 Query 18603 GCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCT 18662 || ||| | || | || || || || ||||| ||||||||||| |||| | ||| Sbjct 1114 GCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCA 1173 Query 18663 GAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAA 18722 || |||||||||||||||||||| || || || ||||| ||||||| ||| || || | | Sbjct 1174 GAAACAGGCTCACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATA 1233 Query 18723 AATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAG 18782 ||| | | || |||||| || | | ||| ||||| | || |||||||| || | ||| Sbjct 1234 AATACAGAAGTTGCGGTCAATAAAGTAGGAATCATCAAAACACCAAACCATCCAATGTAA 1293 Query 18783 AGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || || || | || || || | ||||| ||| || Sbjct 1294 AGACGATTTTCGGTGCTGGTTATCCAGTTACAGAA 1328 >seq13 Length=45874162 Score = 439 bits (486), Expect = 8e-119 Identities = 644/905 (71%), Gaps = 26/905 (3%) Strand=Plus/Minus Query 17825 GTTGATTGAAGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAA 17884 || ||| | ||||| |||||| ||||| |||||||||||||| || ||||| ||||| | Sbjct 7359085 GTCGATCGCAGCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCAT 7359026 Query 17885 GCCAAGGTTAGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGC 17944 ||||||||||||| ||| | | |||||||| ||| | || | ||| | | Sbjct 7359025 ACCAAGGTTAGCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATC 7358966 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 || | |||||||||||| ||||| ||||| | || |||||||||||| ||| || | Sbjct 7358965 AACTACGGATTGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAA 7358906 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || ||||| ||| || | | ||||||||||| ||||||||||||| | | Sbjct 7358905 AGCGGTAAACCAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGA 7358846 Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 |||||| || || ||||| |||||||| | || ||||| || |||||||| | ||||| Sbjct 7358845 ATTGTTGAAACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAAT 7358786 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || || || ||||| |||||| | || || | || ||| ||| || || Sbjct 7358785 ATTATAGGTTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 7358726 Query 18185 CGTTTCTCTAAT--AAGTGAGGAAG-TAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241 ||||| || || || | | ||| || |||| | | ||||||||| ||||| | Sbjct 7358725 GGTTTCCCTGATCAAACTAA--AAGTTACCAAGGAAT-CATGCATAGCACTAAATAAGGA 7358669 Query 18242 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 18301 || |||||||| || || ||| | | ||| || || ||||||||||| ||||| || | Sbjct 7358668 GCCGCCGAATACACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTT 7358609 Query 18302 GGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGA 18361 || || ||||| | ||| |||||| ||||||| ||| || |||||||||||||| || Sbjct 7358608 AGCCTGAAATACAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGA 7358549 Query 18362 GAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATACTGAGAAGGCAGCTGCTACTGGTG 18420 || || || || |||| |||||| | | ||||| || || | | ||| ||| Sbjct 7358548 AAAGCTTCCCTGACCAATAGGATAGATCAAGAAA-AC--AGCA-GTAGCGGCT------- 7358500 Query 18421 CGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTC 18480 |||||| ||| || || |||||||| | | | ||||||||||||| | | Sbjct 7358499 --------GCAACAGCAATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCAC 7358448 Query 18481 GTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTC 18540 | |||||||| || | || | | ||||| | | ||| |||| ||| || || | Sbjct 7358447 GCCCCATGTAGCAAGCTACACCAAGTAAGAAGTGTAGAATAATTAGTTCATAAGGACCGC 7358388 Query 18541 CGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGA 18600 ||||||||||||| || || | | ||| |||||||| || || || ||||| | ||| | Sbjct 7358387 CGTTATATAACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTA 7358328 Query 18601 TTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTC 18660 | || ||| | || | || || || || ||||| ||||||||||| |||| | || Sbjct 7358327 TAGCCGCAGAAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATC 7358268 Query 18661 CTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCA 18720 | || |||||||||||||||||||| || || || |||| ||||||| ||| | || | Sbjct 7358267 CAGAAACAGGCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGA 7358208 Query 18721 AAAAT 18725 |||| Sbjct 7358207 TAAAT 7358203 >seq14 Length=49042192 Score = 325 bits (360), Expect = 1e-84 Identities = 421/579 (73%), Gaps = 2/579 (0%) Strand=Plus/Minus Query 18027 ACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGG 18086 || ||||||||||| ||||||||||||| | | | |||||| || || ||||| ||| Sbjct 41706472 ACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGG 41706413 Query 18087 AAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGG 18146 ||||| | || ||||| || |||||||| || ||||||||||| || ||||| ||||| Sbjct 41706412 AAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGA 41706353 Query 18147 CCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAA 18206 |||||| | || || | || ||| ||| || || ||||| || || | | ||| Sbjct 41706352 CCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAA 41706293 Query 18207 GTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCG 18266 || || | || |||||| || ||||| | || |||||||| || || ||||| Sbjct 41706292 GTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 41706233 Query 18267 AGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTG 18326 | ||| || || ||||||||||| ||||| || || || || ||||| | ||| |||||| Sbjct 41706232 AACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTG 41706173 Query 18327 AAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAA 18386 |||||||| ||| || |||||||||||||| || || || || || |||| |||||| Sbjct 41706172 AAAGTACCTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 41706113 Query 18387 ACGAGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGG 18445 | | || || | || || | ||||| || || || ||||| |||||| |||| | || Sbjct 41706112 ATAAAGAAAACAGCAGTAG-CGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGG 41706054 Query 18446 GCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGAT 18505 |||||||| | | | ||||||||||||| | || |||||||| || | || | Sbjct 41706053 ACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTAGCAAGCTACACCAAG 41705994 Query 18506 GAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGT 18565 | ||||| | ||||| |||| ||| || | |||||||||||||| || || | | Sbjct 41705993 TAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCAATAGA 41705934 Query 18566 TGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 ||| |||||||| || || || ||||| | ||| || || Sbjct 41705933 TGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 41705895 >seq11 Length=34766867 Score = 316 bits (350), Expect = 6e-82 Identities = 419/576 (73%), Gaps = 4/576 (1%) Strand=Plus/Plus Query 18031 GCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGCATACTGGAAGA 18090 |||||||||| ||||||||||||| | | | |||||| || || ||||| ||||||| Sbjct 15042315 GCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCATATTGGAAGA 15042374 Query 18091 TGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTCTTCTTGGCCAA 18150 | | || ||||| || |||||||| || ||||||||||| || ||||| ||||| |||| Sbjct 15042375 TCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCTCTTGACCAA 15042434 Query 18151 ATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCTAATAAGTGAGGAAGTAA 18210 || | || || | || ||| ||| || || ||||| || || | | ||||| | Sbjct 15042435 ATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACAAGAAGTTA 15042494 Query 18211 CAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCA 18270 | | || ||||||||| ||||| | || |||||||| || || ||||| | || Sbjct 15042495 CCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACA 15042554 Query 18271 TATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAG 18330 | || || ||||||||||| ||||| || || || || ||||| | ||| |||||||||| Sbjct 15042555 TGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAAAATTGAAAG 15042614 Query 18331 TACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACG 18389 |||| ||| | |||||||||||||| || || || || || |||| |||||| | | Sbjct 15042615 TACCTAAAATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCA 15042674 Query 18390 AGAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCG 18448 ||||| || | || | || ||||| || || || ||||| |||||| |||| | || || Sbjct 15042675 AGAAA-ACAGCAGTA-GCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCGAAGGACG 15042732 Query 18449 CATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAG 18508 ||| || | | | ||||||||||||| | | |||||||| || | || | | Sbjct 15042733 CATGCCCAAACGAAAACTAAGTTCCCACTCACACCCCATGTAGCAAGCTACACCAAGTAA 15042792 Query 18509 AAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGC 18568 ||||| | ||||| |||| ||| || || ||| |||||||||| || || | | ||| Sbjct 15042793 GAAGTGTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCAACAGATGC 15042852 Query 18569 AGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGC 18604 |||||||| || || || ||||| | ||| || || Sbjct 15042853 CGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGC 15042888 >seq2 Length=48577505 Score = 122 bits (134), Expect = 3e-23 Identities = 131/172 (76%), Gaps = 1/172 (1%) Strand=Plus/Plus Query 18224 CATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATG 18283 ||||||| ||||| | || |||||||| || || ||||| | ||| || || ||||| Sbjct 24951342 CATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGATG 24951401 Query 18284 CATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTAATACC 18343 |||||| ||||| || | || || ||||| | ||| |||||||||||| | ||| || Sbjct 24951402 CATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTGAAAGTATCTGAAATTCC 24951461 Query 18344 AAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAA 18394 |||||||||||||| || || || || || |||| |||||| | | ||||| Sbjct 24951462 TAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAGATCAAGAAA 24951513 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151316259884954