Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq1190 527 2e-145 seq13 408 1e-109 seq14 325 1e-84 seq11 313 7e-81 seq2 113 1e-20 seq15 86.0 2e-12 >seq1190 Length=152218 Score = 527 bits (584), Expect = 2e-145 Identities = 728/1010 (72%), Gaps = 10/1010 (1%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || ||||| || || || || || |||||||| || || | |||||||| Sbjct 346 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 405 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| ||||||||||| || || || | || | | | | | | ||| Sbjct 406 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 465 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAA 21648 ||||| || ||||||||||| |||||||||||||| || || || ||||| | || Sbjct 466 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGCTGATACCTAAAGCG--GTAA 523 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 ||||||||||||| |||||||| ||||| | |||||||| | | ||| ||||| || | Sbjct 524 ACCAAATACCTACTACAGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGA 583 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | || |||||||||||||| | || |||||||| || |||||||| |||||||| || | Sbjct 584 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGG 643 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC 21828 | ||||||||||||||||| ||||||| | || || | | ||| || || || | Sbjct 644 TTTCTTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 703 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || | || || |||| | ||| ||||||||| ||| | || || |||| Sbjct 704 TGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATA 763 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || || ||||| | ||||||||| ||||||||||||||||| ||||||||||| || | Sbjct 764 CACCAGCTACACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATA 823 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | ||| | ||||| || || || || || | |||||| |||| ||||| |||| Sbjct 824 CAATCATAAAATTGAAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 883 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| ||||| | | ||| |||||||| || || || |||||||| || || |||| Sbjct 884 GACCAATAGGATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAA 943 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAG 22128 || ||||| || | ||| || | ||| | |||||||||||||| || ||||||| || Sbjct 944 CAGCAATCCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGT-AG 1002 Query 22129 CAA-AGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGC 22187 ||| || |||| | |||||| | || | |||| | |||||||||||||| | | Sbjct 1003 CAAGCTACACCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAAC 1062 Query 22188 CATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTACTG 22247 |||||||||| | || ||||||||||| || || ||||| | || || || | Sbjct 1063 CATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAGAA 1122 Query 22248 CTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGGGT 22307 | |||| | ||| || || ||||| ||||| ||||| | || || |||| || || Sbjct 1123 GTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAGGC 1182 Query 22308 TCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAAACAAGTT 22367 || || || ||||| || || || || || || ||| ||| ||||||||||| || Sbjct 1183 TCACGAATACCATCAATATCTACTGGAGGGGCAGCAATAAAAGCGATAATAAATACAGAA 1242 Query 22368 GTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAAAGACGGTT 22426 || |||| ||| | | | |||||||| | || || |||||||| | |||||||| || Sbjct 1243 GTTGCGGTCAATAAAGTA-GGAATCATCAAAACACCAAACCATCCAATGTAAAGACGATT 1301 Query 22427 ATTAGTAGAGGTGACCCAGGAACAAAACTGCTCCC--AGGCATTCTCTCT 22474 | || ||| | |||| ||| || | ||| |||| ||| |||| Sbjct 1302 TTCGGTGCTGGTTATCCAGTTACAGAAGCGACCCCATAGGCTTTCGCTCT 1351 >seq13 Length=45874162 Score = 408 bits (452), Expect = 1e-109 Identities = 630/895 (70%), Gaps = 28/895 (3%) Strand=Plus/Minus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || || || || ||||| || || || || || |||||||| || || | |||||||| Sbjct 7359075 GCTAGATCTAGAGGGAAATTATGAGCATTACGTTCATGCATTACTTCCATACCAAGGTTA 7359016 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 || ||||||| ||| ||||||||||| || || || | || | | | | | | ||| Sbjct 7359015 GCTCGGTTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAACTACGGAT 7358956 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTA--GACACGCCAAGCGCAGCAA 21648 ||||| || ||||||||||| |||||||||||||| || || || ||||| | || Sbjct 7358955 TGGTTGAAATTGAAACCATTTAAGTTGAAAGCCATAGTGTTGATACCTAAAGCG--GTAA 7358898 Query 21649 ACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAA 21708 ||||||||||||| | |||||| ||||||| |||||||| | | ||| ||||| || | Sbjct 7358897 ACCAAATACCTACTATAGGCCAAGCAGCAAAGAAGAAATGTAAAGAACGAGAATTGTTGA 7358838 Query 21709 AGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAG 21768 | || |||||||||||||| | || |||||||| || |||||| | |||||||| || | Sbjct 7358837 AACTTGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAACTACAATATTATAGG 7358778 Query 21769 TCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCAC 21828 | || |||||||||||||| ||||||| | || || | | ||| || || || | Sbjct 7358777 TTTCCTCCTCTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCC 7358718 Query 21829 GAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATA 21888 || | | || |||| | | | ||||||||| || || || || |||| Sbjct 7358717 TGATCAAACTAAAAGTTACCAAGGAATCATGCATAGCACTAAATAAGGAGCCGCCGAATA 7358658 Query 21889 CGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACA 21948 | || || ||| ||| ||||||||| ||||||||||||||||| |||| |||||| || | Sbjct 7358657 CACCAGCTACAACCAACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATA 7358598 Query 21949 CCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCT 22008 | | ||| | ||| | || || || || || | |||||| |||| ||||| |||| Sbjct 7358597 CAATCATAAAATTGGAAGTACCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCT 7358538 Query 22009 GTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAA 22068 | |||| ||||| | | ||| |||||||| |||||| |||| Sbjct 7358537 GACCAATAGGATAGATCAAGAAAACAGCAGT---AGCGGC---------------TGCAA 7358496 Query 22069 CAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAG 22128 || || || || | ||| || | ||| | |||||||||||||| || ||||||| || Sbjct 7358495 CAGCAATTCAAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGT-AG 7358437 Query 22129 CAA-AGACGCCAATGAGGAAGTG--GAATACGGTGAGTTGGAATGGACCGCCGTTGTACA 22185 ||| || |||| | |||||| ||||| | |||| | ||||||||||| || | Sbjct 7358436 CAAGCTACACCAAGTAAGAAGTGTAGAATA--ATTAGTTCATAAGGACCGCCGTTATATA 7358379 Query 22186 GCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGGCATTAC 22245 ||||||||||| | || ||||||||||| || || ||||| | || || || | Sbjct 7358378 ACCATTCATCAACAGATGCCGCTTCCCAAATAGGATAAAAGTGCAAACCTATAGCCGCAG 7358319 Query 22246 TGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAGCGACGG 22305 | |||| | ||| || || ||||| ||||| ||||| | || || |||| || | Sbjct 7358318 AAGTAGGAATAATGGCACCAGAAATGATATTGTTTCCATAAAGTAGAGATCCAGAAACAG 7358259 Query 22306 GTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAAA 22360 | || || || ||||| || || || | || || ||| ||| | ||| ||||| Sbjct 7358258 GCTCACGAATACCATCAATATCTACTAGAGGGGCAGCAATAAAAGTGATGATAAA 7358204 Score = 82.4 bits (90), Expect = 2e-11 Identities = 97/129 (75%), Gaps = 2/129 (2%) Strand=Plus/Plus Query 22101 CTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACGCCAATGAGGAAGTGGAATACGGT 22159 ||||||| |||||| || |||||||| |||| || |||| | |||||| | || | Sbjct 24996887 CTAAGTTTCCACTCACGCCCCATGTA-GCAAGCTACACCAAGTAAGAAGTGTAGAACAAT 24996945 Query 22160 GAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGG 22219 |||| | |||||||||||||| | ||||||||||| | | ||||||||||| || Sbjct 24996946 TAGTTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGTCGCTTCCCAAATAGG 24997005 Query 22220 GTAGAAGTG 22228 || ||||| Sbjct 24997006 ATAAAAGTG 24997014 >seq14 Length=49042192 Score = 325 bits (360), Expect = 1e-84 Identities = 417/572 (73%), Gaps = 2/572 (0%) Strand=Plus/Minus Query 21658 CTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCAT 21717 |||| || ||||| ||||| | |||||||| | | ||| |||| || || || |||| Sbjct 41706477 CTACTACTGGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCAT 41706418 Query 21718 ATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCT 21777 |||||||||| | || |||||||| || |||||||| |||||||| || || ||||||| Sbjct 41706417 ATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCT 41706358 Query 21778 CTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTG 21837 |||||||||| ||||||| | || || | | ||| || || || | || | Sbjct 41706357 CTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAAC 41706298 Query 21838 ACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCA 21897 | || || |||| | ||| |||||| || ||| | || || ||||| || || | Sbjct 41706297 AAGAAGTTACCAAGGAACCATGCATATCACTGAATAGGGAGCCGCCGAATACACCAGCTA 41706238 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGT 21957 |||| | ||||||||| ||||||||||||||||| ||||||||||| || || | ||| Sbjct 41706237 CACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAA 41706178 Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 | ||||| || || | || || | |||||| |||| ||||| ||||| |||| | Sbjct 41706177 AATTGAAAGTACCTAAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAG 41706118 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 |||| | || ||| |||||||| || || || |||||||| || || |||||| ||| Sbjct 41706117 GATAGATAAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCG 41706058 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAAAG-ACG 22136 | || | ||| || | ||| | |||||||||||||| || |||||||| |||| || Sbjct 41706057 AAGGACGCATACCCAAACGAAAACTAAGTTCCCACTCACGCCCCATGTA-GCAAGCTACA 41705999 Query 22137 CCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCA 22196 |||| | |||||| | || | |||| | ||| ||||||| || | |||||||||| Sbjct 41705998 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGATCGCCGTTATATAACCATTCATCA 41705939 Query 22197 AGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 | | || ||||||||||| || || ||||| Sbjct 41705938 ATAGATGCCGCTTCCCAAATAGGATAAAAGTG 41705907 >seq11 Length=34766867 Score = 313 bits (346), Expect = 7e-81 Identities = 414/572 (72%), Gaps = 2/572 (0%) Strand=Plus/Plus Query 21658 CTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCAT 21717 |||| ||| |||| ||||| | |||||||| | | ||| |||| || || || |||| Sbjct 15042306 CTACTACAAGCCAAGCAGCTAAGAAGAAATGTAAAGAACGACAATTGTTGAAACTTGCAT 15042365 Query 21718 ATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCT 21777 |||||||||| | || |||||||| || |||||||| |||||||| || || ||||||| Sbjct 15042366 ATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACAATATTATAGGTTTCTTCCT 15042425 Query 21778 CTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAGTCGTCTCACGAATGAGTG 21837 |||||||||| ||||||| | || || | | ||| || || || | || | Sbjct 15042426 CTTGACCAAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAAC 15042485 Query 21838 ACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCA 21897 | || || |||| | ||| ||||||||| ||| | || || ||||| || || | Sbjct 15042486 AAGAAGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTA 15042545 Query 21898 CACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGT 21957 |||| | ||||||||| ||||||||||||||||| ||||||||||| || || | ||| Sbjct 15042546 CACCTAACATGTGAAATGGATGCATAAGAATATTATGCTCAGCCTGAAATACAATCATAA 15042605 Query 21958 AGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACG 22017 | ||||| || || | || | | |||||| |||| ||||| ||||| |||| | Sbjct 15042606 AATTGAAAGTACCTAAAATTCTTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAG 15042665 Query 22018 GATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCC 22077 |||| | | ||| |||||||| || || || |||||||| || || |||||| ||| Sbjct 15042666 GATAGATCAAGAAAACAGCAGTAGCGGCTGCAACAGGAGCTGAATATGCAACAGCAATCG 15042725 Query 22078 AGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAAGCAA-AGACG 22136 | || | ||| || | ||| | |||||||||||||| | ||||||| ||||| || Sbjct 15042726 AAGGACGCATGCCCAAACGAAAACTAAGTTCCCACTCACACCCCATGT-AGCAAGCTACA 15042784 Query 22137 CCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGTTGTACAGCCATTCATCA 22196 |||| | |||||| | || | |||| | ||||| ||| | || | |||||||||| Sbjct 15042785 CCAAGTAAGAAGTGTAGAACAATTAGTTCATAAGGACCACCGCTATATAACCATTCATCA 15042844 Query 22197 AGTGTAGCAGCTTCCCAAATTGGGTAGAAGTG 22228 | | || ||||||||||| || || ||||| Sbjct 15042845 ACAGATGCCGCTTCCCAAATAGGATAAAAGTG 15042876 >seq2 Length=48577505 Score = 113 bits (124), Expect = 1e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 21843 GTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACACCC 21902 || |||| | ||| | ||||||| ||| | || || ||||| || || ||||| Sbjct 24951325 GTTACCAAGGAACCATACATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACACCT 24951384 Query 21903 AGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTG 21962 | ||||||||| ||||||||||||||||| |||| |||||| || || | ||| | ||| Sbjct 24951385 AACATGTGAAATGGATGCATAAGAATATTATGCTTAGCCTGAAATACAATCATAAAATTG 24951444 Query 21963 AAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAA 22022 || || | || || || | |||||| |||| ||||| ||||| |||| ||||| Sbjct 24951445 AAAGTATCTGAAATTCCTAGAGGCATACCATCTGAAAAGCTTCCCTGACCAATAGGATAG 24951504 Query 22023 ACAAGGAACACAGCAGTCGC 22042 | | ||| |||||||| || Sbjct 24951505 ATCAAGAAAACAGCAGTAGC 24951524 >seq15 Length=51756343 Score = 86.0 bits (94), Expect = 2e-12 Identities = 91/120 (76%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 21677 AAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCATATTGGAAGATAAGCCGACC 21736 ||| |||||||| | | ||| ||||| || || || ||||||||||| || | | || Sbjct 19464944 AAGTAAGAAATGTAAAGAACGAGAATTGTTGAAACTTGCATATTGGAATATCAATGGGCC 19465003 Query 21737 AAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 |||||| || ||| | | |||||||| | || |||| |||||||||||| ||||||| Sbjct 19465004 AAAATAACCATGAACGACTACAATATTATTGGTTTCTTTCTCTTGACCAAATATGTAACC 19465063 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146205932161980