Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Glycine_20max_20[refseq_20GCF_5F000004515.4_202015-11-04] 1,191 sequences; 978,971,636 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq5 114 2e-20 seq15 105 8e-18 seq4 105 8e-18 seq6 104 3e-17 seq3 104 3e-17 seq20 102 1e-16 seq9 102 1e-16 seq8 84.2 3e-11 seq16 82.4 9e-11 >seq5 Length=42234498 Score = 114 bits (126), Expect = 2e-20 Identities = 167/230 (73%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | || |||||||||| ||||||| ||||||| | || |||| || | Sbjct 37338370 GGGACTTTGACTATGATTACTTTGGTTTCAAAACTCTTGAGAGGTCATACCTCTTGAA-G 37338312 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | || | | |||||| || ||| ||||||| ||| |||| || | || || Sbjct 37338311 GTTCAA-GGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGCTGTTGGAAT 37338253 Query 75247 CCACGGGGAAGACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGT 75305 || ||| ||||||||||||| | | || |||||| ||| |||||| || | || Sbjct 37338252 TCATAAGGATGACATTGATTCTGCTGTCAGA-ACATACCACATGATGTCTCAGAGATGGT 37338194 Query 75306 TCATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 ||| ||| ||| | ||||| || |||||||| || ||||| || || ||| Sbjct 37338193 TCACTCATGCATCTCCAACACTTTTCAATGCAGGAACACCTAGGCCTCAG 37338144 Score = 95.1 bits (104), Expect = 1e-14 Identities = 318/491 (65%), Gaps = 8/491 (2%) Strand=Plus/Minus Query 175191 TGATGTTGAGGGGATTGACGCCGCCAAAGATGAACTTGAAGAGATTGTGGATTTTCTCAA 175250 |||||||| ||| | || | ||||| | || || ||| ||||||| ||||| || Sbjct 32503511 TGATGTTGCTGGGGTGGATGAAGCCAAGCAGGACTTTATGGAGGTTGTGGAGTTTCTAAA 32503452 Query 175251 GCAACCCGAGAGATATTTTGGAAGTGGTGCCAAGATCCCCCGAGGCGCCCTTCTCGCGGG 175310 | | || ||||| | || ||| || || || ||| | ||||| | || Sbjct 32503451 GAAGCCTGAGAGGTTCACTGCTGTTGGGGCTCGCATACCGAAAGGAGTTCTTCTTGTTGG 32503392 Query 175311 TAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCC 175370 | ||||| || || ||||| || | ||| || || || |||||| | ||| || Sbjct 32503391 TCCTCCAGGAACTGGGAAGACACTGTTAGCCAAGGCTATTGCTGGTGAAGCTGGTGTTCC 32503332 Query 175371 ATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAA 175429 ||| || || | || | | | ||||| ||||||||||||||||| ||||| Sbjct 32503331 ATTTTTCTCAATA-TCAGGTTCTGAGTTTGTTGAGATGTTTGTTGGTGTTGGTGCTTCTC 32503273 Query 175430 GGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATG 175489 | ||||| ||| | || | | ||| || ||| || || |||||||| |||||| Sbjct 32503272 GTGTTCGTGATTTGTTCAAGAAGGCCAAAGAGAATGCCCCTTGCATTGTCTTTGTTGATG 32503213 Query 175490 AGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG---TGGTATGCCAGCAAATGACGAGA 175546 | |||||||| || || | ||| | | |||| |||| | ||||| || | Sbjct 32503212 AAATTGATGCTGTTGGAAGACAAAGAGGGACTGGAATTGGT---GGTGGGAATGATGAAA 32503156 Query 175547 GAGAACAAACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCA 175606 |||| || || | || ||||| | || || |||||||| ||||| | | ||||| | Sbjct 32503155 GAGAGCAGACCCTCAACCAACTTTTGACAGAAATGGATGGGTTTGAGGGTAACACTGGTA 32503096 Query 175607 TTGTGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGATGACGCCCTCCTTCGCCCGG 175666 | | || |||| || ||||| | | || || ||||| ||| | | | |||| Sbjct 32503095 TCATTGTCGTTGCAGCAACTAACAGGGCTGACATTCTTGACTCTGCCTTATTGAGACCGG 32503036 Query 175667 GTCGTTTTGAT 175677 |||| |||||| Sbjct 32503035 GTCGGTTTGAT 32503025 >seq15 Length=51756343 Score = 105 bits (116), Expect = 8e-18 Identities = 210/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGA 175403 || || || |||||| || ||||||||| || || | ||| | | | ||||| || Sbjct 13380908 GCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAAT-CTCAGGTTCTGAGTTTGTAGA 13380966 Query 175404 GATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAA 175463 ||||||||||||||| ||||| | || |||||| | || | ||| || || Sbjct 13380967 GATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGCGATTTATTCAGGAAGGCCAAAGAGAA 13381026 Query 175464 TCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG 175523 | ||||| ||||| || ||||||| |||||||| || || | |||| | | |||| Sbjct 13381027 TGCCCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGG 13381086 Query 175524 ---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 |||| || ||||| || |||||||| || | |||||||| | || || || Sbjct 13381087 AATTGGT---GGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAAT 13381143 Query 175581 GGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATAT 175640 |||||| ||||| | | || || || | || ||||| || ||||| | || || || Sbjct 13381144 GGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGGGTTGACAT 13381203 Query 175641 CCTTGAT 175647 |||||| Sbjct 13381204 TCTTGAT 13381210 >seq4 Length=52388848 Score = 105 bits (116), Expect = 8e-18 Identities = 161/226 (71%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 75188 |||| ||| | || ||| ||||| ||||||||||||||| | || |||| || || Sbjct 48824512 GACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAA-GGT 48824570 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 || | || | | |||||| || || ||||||| ||| |||| || | || || | Sbjct 48824571 TCAAGGGAAGGTTG-TGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGATTC 48824629 Query 75249 ACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCA 75308 || ||| ||||| ||||||| | | | |||||| ||| |||||| ||| | ||| | Sbjct 48824630 ACAAGGATGACATAGATTCTGCCATCAAAACATACCACATGATGTCTCAACGATGGTTTA 48824689 Query 75309 TTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 ||| ||| | || || || ||||||||||| ||||| || || || Sbjct 48824690 CTCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCA 48824735 Score = 87.8 bits (96), Expect = 2e-12 Identities = 224/338 (66%), Gaps = 10/338 (3%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||||||||| || || | || | ||||| ||| | || || || Sbjct 1502600 CCGGGAACCGGAAAGACCCTTCTGGCGAGGGCTGTGGCGGGGGAAGCTGGGGTGCCGTTT 1502541 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| | || | | || || || | ||||| || || ||||| ||||| Sbjct 1502540 TTCTCGTGCGCGGCTTCGGAGTTCGTTGAACTTTTTGTGGGAGTTGGTGCGTCGAGGGTG 1502481 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | || | || || || ||||| ||||||||||||||| Sbjct 1502480 AGAGATTTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATT 1502421 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGG--TGGTATGCCAGCAAATGACGAGAGAGAAC 175552 || || || || | ||| | | || || | | | | | ||||||||||| |||| Sbjct 1502420 GACGCCGTTGGGAGGCAGAGAGGGGCGGGGCTCGGAGGTGGG--AATGACGAGAGGGAAC 1502363 Query 175553 AAACAATTAATCAACTACTCACCGAGATGGATGGCTT---TGACAATGAGACTGGCATTG 175609 | || ||||| || || || || |||||||||||||| || |||| |||| || Sbjct 1502362 AGACTATTAACCAGCTTCTGACGGAGATGGATGGCTTTTCTGGCAAT---TCTGGTGTTA 1502306 Query 175610 TGGTTATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | ||| | || |||||||| | |||| | |||||| Sbjct 1502305 TTGTTTTGGCTGCCACTAACAGACCGGATGTTCTTGAT 1502268 >seq6 Length=51416163 Score = 104 bits (114), Expect = 3e-17 Identities = 162/228 (71%), Gaps = 4/228 (2%) Strand=Plus/Minus Query 75129 GGGACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACG 75186 |||||| ||| | || ||| ||||| ||||||||||||||| | || |||| || | Sbjct 12139737 GGGACTTTGACTATGATTATTTTGGATTCAAAACCCTTGAGAGGTCTTACCTCTTGAA-G 12139679 Query 75187 GCTCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCAT 75246 | || | |||| | |||||| || || ||||||| ||| |||| || | || || Sbjct 12139678 GTTCAAGGGCAGGTTT-TGGAAAGGCCTCAACACATGTTGATGAGGGTTGCTGTTGGGAT 12139620 Query 75247 CCACGGGGAAGACATTGATTCTGTCTTGGAGACATACGACAAGATGTCCCAAGGTATGTT 75306 ||| ||| ||||| ||||||| | | || ||| ||| |||||| ||| | ||| Sbjct 12139619 TCACAAGGATGACATAGATTCTGCTGTCAAAACTTACCACATGATGTCTCAACGATGGTT 12139560 Query 75307 CATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCA 75354 || || ||| | || || || ||||||||||| ||||| || || || Sbjct 12139559 CACCCATGCATCTCCGACACTTTTCAATGCTGGAACACCTAGGCCTCA 12139512 Score = 95.1 bits (104), Expect = 1e-14 Identities = 223/334 (67%), Gaps = 2/334 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || ||||||||||| || || | || | ||||| ||| | || || || Sbjct 1475025 CCGGGAACCGGAAAGACCCTTCTGGCGAGGGCGGTGGCGGGAGAAGCTGGGGTGCCGTTT 1474966 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || |||| | || | | || |||||| | || || || || ||||| ||||| Sbjct 1474965 TTCTCGTGCGCGGCTTCGGAGTTCGTGGAGCTTTTCGTGGGGGTTGGTGCTTCGAGGGTG 1474906 Query 175435 CGCGATCTCTTTGAAATCGCCCGCGAAAATCAACCATGTATTGTCTTCATTGATGAGATT 175494 | ||| | ||||| | || | || || || ||||| ||||||||||||||| Sbjct 1474905 AGGGATTTGTTTGAGAAGGCGAAGGGGAAGGCGCCGTGCATTGTTTTCATTGATGAGATT 1474846 Query 175495 GATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCA-GCAAATGACGAGAGAGAACA 175553 || || || || | ||| | | || || | || | | |||||| ||||| ||||| Sbjct 1474845 GACGCCGTTGGGAGGCAGAGAGGGGCGGG-GCTAGGAGGTGGAAATGATGAGAGGGAACA 1474787 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTTGACAATGAGACTGGCATTGTGGT 175613 ||| |||||||| || || || ||||||||||| ||| | | |||| || | || Sbjct 1474786 AACTATTAATCAGCTTCTTACTGAGATGGATGGGTTTTCTGGTAATTCTGGTGTTATTGT 1474727 Query 175614 TATTGCGGCCACTAATCGCGTGGATATCCTTGAT 175647 | | || |||||||| | |||| | |||||| Sbjct 1474726 TTTGGCTGCCACTAACAGACCGGATGTTCTTGAT 1474693 >seq3 Length=45779434 Score = 104 bits (114), Expect = 3e-17 Identities = 113/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || || || || ||||| || ||||||||||| Sbjct 40573088 TCCTTCGCGGAGCGCCTCGTGGCATTCGCTTGCGTCGAGGGAATATTCTTCTCCGGAAGC 40573147 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 || ||||| || | |||| | |||||||| || | ||||| || || |||||| || Sbjct 40573148 TTTTGCGCGATATTTTGGCTCAAGAAGCGTGGGTTAATGCCGGGGCTCACCTTCTCCAAC 40573207 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 ||||| || || ||||||||||| || ||| Sbjct 40573208 GAACTCATCTCGCGAGATGAGGGGCTTCAC 40573237 >seq20 Length=47900577 Score = 102 bits (112), Expect = 1e-16 Identities = 119/161 (74%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 |||||||| |||||||| | || || || || || | || || ||||||||||| Sbjct 3442469 TCCTTCGCAGAGCGCCTCATGGCATTCGCTTGCGTCTAAGGAATATTCTTCTCCGGAAGC 3442410 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | |||| | |||||||| || | ||| |||| || |||||| ||| Sbjct 3442409 TTCTGCGCGATATTTTGGCTCAAGAAGCGCGGGTTAATGTCAGGGCTCACCTTCTCCAAT 3442350 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 ||| | || || ||||||||||| || ||| | || || || Sbjct 3442349 GAATTCATCTCGCGAGATGAGGGGCTTCACTACGACTTCGC 3442309 >seq9 Length=50189283 Score = 102 bits (112), Expect = 1e-16 Identities = 209/307 (68%), Gaps = 8/307 (3%) Strand=Plus/Plus Query 175345 GCCATCGCGGGTGAATCAAATGTCCCATTCATC-CAGTGCTCTGCCGCAAACTTTGTGGA 175403 || || || |||||| || ||||||||| || || | ||| | | | ||||| || Sbjct 4611651 GCTATTGCAGGTGAAGCAGGTGTCCCATTTTTCTCAAT-CTCAGGTTCTGAGTTTGTAGA 4611709 Query 175404 GATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAAAA 175463 ||||||||||||||| ||||| | || || ||| | || | ||| || || Sbjct 4611710 GATGTTTGTTGGTGTTGGTGCTTCTCGAGTCCGTGATTTATTCAGGAAGGCCAAAGAGAA 4611769 Query 175464 TCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGCTGG 175523 | ||||| ||||| || ||||||| |||||||| || || | |||| | | |||| Sbjct 4611770 TGCTCCATGCATTGTTTTTGTTGATGAAATTGATGCTGTTGGAAGGCAAAGAGGTACTGG 4611829 Query 175524 ---TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAGAT 175580 |||| || ||||| || |||||||| || | |||||||| | || || || Sbjct 4611830 AATTGGT---GGAGGGAATGATGAAAGAGAACAGACCCTCAATCAACTTTTGACAGAAAT 4611886 Query 175581 GGATGGCTTTGACAATGAGACTGGCATTGTGGTTATTGCGGCCACTAATCGCGTGGATAT 175640 |||||| ||||| | | || || || | || ||||| || ||||| | || || || Sbjct 4611887 GGATGGATTTGAGGGTAATACCGGTATCATTGTCATTGCAGCTACTAACAGAGTTGACAT 4611946 Query 175641 CCTTGAT 175647 |||||| Sbjct 4611947 TCTTGAT 4611953 >seq8 Length=47837022 Score = 84.2 bits (92), Expect = 3e-11 Identities = 160/228 (70%), Gaps = 7/228 (3%) Strand=Plus/Minus Query 75131 GACTATGATTTTGGTTACTTTGGTCTCAAAACCCTTGAGAAGAGCTA--TCTTCAACGGC 75188 |||| ||| | || |||||||||| ||||||||||||||| | || || | || || Sbjct 11048185 GACTTTGACTATGATTACTTTGGTTTCAAAACCCTTGAGAGGTCATACATCCTGAA-GGT 11048127 Query 75189 TCGATGGCATCCTCATGGAAACCCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCC 75248 || | || | | |||||| || ||| ||||||| ||| |||| | | || || | Sbjct 11048126 TCAA-GGAAAGGTTGTGGAAAGGCCTCAGCACATGTTGATGAGGGTTGTTGTTGGAATTC 11048068 Query 75249 ACGGGGAAGACATTGATTCTG-TCTTGGAGACATACGACAAGATGTCCCAAGGTATGTTC 75307 | ||| ||||||||||||| | | || || ||| ||| |||||| || | ||| Sbjct 11048067 ATAAGGATGACATTGATTCTGCTGTCAGA-ACTTACCACATGATGTCTCAGAGATGGTTT 11048009 Query 75308 ATTCACGCAACACCAACCCTCTTCAATGCTGGTACACCAAGACCGCAG 75355 | ||| ||| | ||||| || |||||| | | ||||| || || ||| Sbjct 11048008 ACTCATGCATCTCCAACACTTTTCAATAC-AGAACACCTAGGCCTCAG 11047962 >seq16 Length=37887014 Score = 82.4 bits (90), Expect = 9e-11 Identities = 86/113 (76%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 65104 GAGGGTATCTTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTC 65163 || ||||||||||||||||| ||||||||| | | ||| | || || || || ||| Sbjct 5526617 GAAGGTATCTTCTTCTCCGGAAGCTTCTGCGCTGTCTTCTGGCTCAAAAAACGTGGACTC 5526558 Query 65164 ATGCCAGGCCTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCA 65216 ||||| || || |||||||||||||| || || || ||||| ||||| || Sbjct 5526557 ATGCCCGGACTCACTTTCTCAAATGAACTAATATCACGCGATGAAGGTCTTCA 5526505 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596560718570080